Variant report

Variant	rs8040925
Chromosome Location	chr15:41109032-41109033
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41094059..41097035-chr15:41107572..41109488,2	MCF-7	breast:
2	chr15:41107457..41109620-chr15:41136120..41137941,3	MCF-7	breast:
3	chr15:41097893..41103310-chr15:41103796..41109268,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166145	Chromatin interaction
ENSG00000261183	Chromatin interaction
ENSG00000104129	Chromatin interaction
ENSG00000166140	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10220885	1.00[EUR][1000 genomes]
rs12323939	1.00[EUR][1000 genomes]
rs16971119	1.00[EUR][1000 genomes]
rs45501094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45571032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45604436	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55896567	1.00[EUR][1000 genomes]
rs55906732	1.00[EUR][1000 genomes]
rs56229816	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57242620	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57288992	1.00[EUR][1000 genomes]
rs58097169	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58375351	1.00[EUR][1000 genomes]
rs58681580	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58738238	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59508492	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59528823	1.00[EUR][1000 genomes]
rs59558714	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60109064	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60111609	1.00[EUR][1000 genomes]
rs60163307	1.00[EUR][1000 genomes]
rs60578270	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60822673	1.00[EUR][1000 genomes]
rs6492962	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6492963	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7161941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7164574	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7166733	1.00[EUR][1000 genomes]
rs7167831	1.00[EUR][1000 genomes]
rs7168217	1.00[EUR][1000 genomes]
rs7169273	1.00[EUR][1000 genomes]
rs7171451	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171898	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7172356	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7178058	1.00[EUR][1000 genomes]
rs7178244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182066	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182516	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011880	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011881	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011884	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011886	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74011887	1.00[EUR][1000 genomes]
rs74011888	1.00[EUR][1000 genomes]
rs74011933	1.00[EUR][1000 genomes]
rs74011936	1.00[EUR][1000 genomes]
rs8035580	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8038751	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8039169	1.00[EUR][1000 genomes]
rs8039942	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040579	1.00[EUR][1000 genomes]
rs9672224	1.00[EUR][1000 genomes]
rs9744142	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904102	chr15:41046883-41201699	Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
4	nsv1054764	chr15:41068625-41196410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv569228	chr15:41106485-41194151	Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41100800-41109200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr15:41100800-41120200	Weak transcription	Small Intestine	intestine
3	chr15:41101200-41110400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr15:41101400-41109200	Strong transcription	Sigmoid Colon	Sigmoid Colon
5	chr15:41101400-41109600	Strong transcription	Fetal Intestine Small	intestine
6	chr15:41101400-41115800	Weak transcription	A549	lung
7	chr15:41103400-41110400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:41103800-41115600	Weak transcription	HepG2	liver
9	chr15:41104200-41115800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:41104600-41115800	Weak transcription	HMEC	breast
11	chr15:41106000-41117600	Weak transcription	Hela-S3	cervix
12	chr15:41106600-41109800	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr15:41107000-41109200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr15:41107000-41109400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr15:41107200-41109400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr15:41107200-41109400	Weak transcription	Osteobl	bone
17	chr15:41107200-41110400	Weak transcription	Lung	lung
18	chr15:41107200-41135200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr15:41107400-41109200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:41107400-41109200	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr15:41107400-41109600	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr15:41107400-41109800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:41107400-41110000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr15:41107400-41110200	Weak transcription	Fetal Brain Female	brain
25	chr15:41107400-41110600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:41107400-41115400	Weak transcription	Fetal Intestine Large	intestine
27	chr15:41107400-41118000	Weak transcription	Gastric	stomach
28	chr15:41107600-41109200	Weak transcription	Liver	Liver
29	chr15:41107600-41109400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr15:41107600-41109800	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:41107600-41109800	Weak transcription	Stomach Mucosa	stomach
32	chr15:41107600-41110200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr15:41107600-41117600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr15:41107600-41117600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr15:41107600-41120400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr15:41107600-41135200	Weak transcription	Esophagus	oesophagus
37	chr15:41107800-41109400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:41107800-41109400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
39	chr15:41107800-41109600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr15:41107800-41109600	Weak transcription	Right Atrium	heart
41	chr15:41107800-41109800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:41107800-41109800	Weak transcription	Adipose Nuclei	Adipose
43	chr15:41107800-41110000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr15:41107800-41110000	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr15:41107800-41110200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr15:41107800-41110400	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr15:41107800-41115800	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr15:41107800-41116000	Weak transcription	NHEK	skin
49	chr15:41108000-41109600	Weak transcription	Primary B cells from cord blood	blood
50	chr15:41108000-41109600	Weak transcription	Primary B cells from peripheral blood	blood

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