Variant report

Variant	rs7166733
Chromosome Location	chr15:41037656-41037657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41031017..41033907-chr15:41037060..41039542,3	MCF-7	breast:
2	chr15:41035825..41037680-chr15:41060818..41063658,2	K562	blood:
3	chr15:41037003..41039062-chr15:41068615..41070670,2	MCF-7	breast:
4	chr15:40986478..40988882-chr15:41036813..41039846,3	K562	blood:
5	chr15:41036885..41040237-chr15:41045392..41049336,5	MCF-7	breast:
6	chr15:41037589..41040458-chr15:41068418..41070751,2	K562	blood:
7	chr15:41035271..41040468-chr15:41046040..41049485,6	MCF-7	breast:
8	chr15:41036948..41038953-chr15:41054723..41057087,2	K562	blood:
9	chr15:41036541..41039505-chr15:41136514..41138272,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000261183	Chromatin interaction
ENSG00000104129	Chromatin interaction
ENSG00000166145	Chromatin interaction
ENSG00000188277	Chromatin interaction
ENSG00000051180	Chromatin interaction
ENSG00000245849	Chromatin interaction
ENSG00000137824	Chromatin interaction
ENSG00000137880	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10220885	1.00[EUR][1000 genomes]
rs12323939	1.00[EUR][1000 genomes]
rs16971119	1.00[EUR][1000 genomes]
rs45501094	1.00[EUR][1000 genomes]
rs45571032	1.00[EUR][1000 genomes]
rs45604436	1.00[EUR][1000 genomes]
rs55896567	1.00[EUR][1000 genomes]
rs55906732	1.00[EUR][1000 genomes]
rs56229816	1.00[EUR][1000 genomes]
rs57242620	1.00[EUR][1000 genomes]
rs57288992	1.00[EUR][1000 genomes]
rs58097169	1.00[EUR][1000 genomes]
rs58375351	1.00[EUR][1000 genomes]
rs58681580	1.00[EUR][1000 genomes]
rs58738238	1.00[EUR][1000 genomes]
rs59508492	1.00[EUR][1000 genomes]
rs59528823	1.00[EUR][1000 genomes]
rs59558714	1.00[EUR][1000 genomes]
rs60109064	1.00[EUR][1000 genomes]
rs60111609	1.00[EUR][1000 genomes]
rs60163307	1.00[EUR][1000 genomes]
rs60578270	1.00[EUR][1000 genomes]
rs60822673	1.00[EUR][1000 genomes]
rs6492962	1.00[EUR][1000 genomes]
rs6492963	1.00[EUR][1000 genomes]
rs7161941	1.00[EUR][1000 genomes]
rs7164574	1.00[EUR][1000 genomes]
rs7167831	1.00[EUR][1000 genomes]
rs7168217	1.00[EUR][1000 genomes]
rs7169273	1.00[EUR][1000 genomes]
rs7171451	1.00[EUR][1000 genomes]
rs7171898	1.00[EUR][1000 genomes]
rs7172356	1.00[EUR][1000 genomes]
rs7178058	1.00[EUR][1000 genomes]
rs7178244	1.00[EUR][1000 genomes]
rs7182066	1.00[EUR][1000 genomes]
rs7182516	1.00[EUR][1000 genomes]
rs74011880	1.00[EUR][1000 genomes]
rs74011881	1.00[EUR][1000 genomes]
rs74011884	1.00[EUR][1000 genomes]
rs74011886	1.00[EUR][1000 genomes]
rs74011887	1.00[EUR][1000 genomes]
rs74011888	1.00[EUR][1000 genomes]
rs74011933	1.00[EUR][1000 genomes]
rs74011936	1.00[EUR][1000 genomes]
rs8035580	1.00[EUR][1000 genomes]
rs8038751	1.00[EUR][1000 genomes]
rs8039169	1.00[EUR][1000 genomes]
rs8039942	1.00[EUR][1000 genomes]
rs8040579	0.97[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8040925	1.00[EUR][1000 genomes]
rs9672224	1.00[EUR][1000 genomes]
rs9744142	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053173	chr15:40933163-41094127	Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
2	nsv542363	chr15:40933163-41094127	Flanking Active TSS Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv904099	chr15:40949526-41041875	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
5	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40998800-41038000	Weak transcription	Stomach Mucosa	stomach
2	chr15:41008200-41046600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr15:41019400-41046200	Strong transcription	Fetal Stomach	stomach
4	chr15:41020000-41043600	Strong transcription	Dnd41	blood
5	chr15:41020600-41037800	Strong transcription	Primary monocytes fromperipheralblood	blood
6	chr15:41020600-41038200	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr15:41020800-41045400	Strong transcription	Fetal Muscle Trunk	muscle
8	chr15:41021800-41044600	Strong transcription	Brain Germinal Matrix	brain
9	chr15:41023200-41045200	Strong transcription	Thymus	Thymus
10	chr15:41023800-41038400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr15:41023800-41045200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:41025600-41045000	Strong transcription	Primary T cells from cord blood	blood
13	chr15:41025600-41045400	Strong transcription	Stomach Smooth Muscle	stomach
14	chr15:41026000-41044600	Strong transcription	Sigmoid Colon	Sigmoid Colon
15	chr15:41026200-41044600	Strong transcription	Lung	lung
16	chr15:41026600-41038200	Strong transcription	Brain Anterior Caudate	brain
17	chr15:41026800-41045200	Strong transcription	Brain Inferior Temporal Lobe	brain
18	chr15:41027200-41038400	Strong transcription	Brain Hippocampus Middle	brain
19	chr15:41027800-41038200	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr15:41028000-41037800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:41029000-41041800	Weak transcription	Fetal Kidney	kidney
22	chr15:41030800-41044000	Weak transcription	Psoas Muscle	Psoas
23	chr15:41031000-41046600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr15:41032000-41043000	Weak transcription	Fetal Brain Male	brain
25	chr15:41032400-41038000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr15:41032600-41046200	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr15:41032600-41046600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:41032600-41046600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr15:41033200-41039200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:41033200-41042000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr15:41034000-41038400	Strong transcription	Aorta	Aorta
32	chr15:41034200-41038400	Strong transcription	Brain Angular Gyrus	brain
33	chr15:41034200-41045800	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr15:41034400-41044400	Strong transcription	Duodenum Smooth Muscle	Duodenum
35	chr15:41034400-41044600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr15:41034400-41045200	Strong transcription	Cortex derived primary cultured neurospheres	brain
37	chr15:41034600-41044800	Strong transcription	Brain Substantia Nigra	brain
38	chr15:41034600-41045800	Genic enhancers	Fetal Intestine Small	intestine
39	chr15:41034800-41038400	Strong transcription	HepG2	liver
40	chr15:41034800-41038600	Strong transcription	Esophagus	oesophagus
41	chr15:41034800-41044400	Strong transcription	Primary B cells from peripheral blood	blood
42	chr15:41034800-41044600	Strong transcription	Fetal Brain Female	brain
43	chr15:41034800-41046200	Genic enhancers	Fetal Intestine Large	intestine
44	chr15:41035400-41038200	Strong transcription	Pancreas	Pancrea
45	chr15:41035600-41038200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr15:41035600-41038200	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr15:41035600-41039800	Strong transcription	Ovary	ovary
48	chr15:41035600-41040600	Genic enhancers	K562	blood
49	chr15:41035800-41038400	Strong transcription	Colon Smooth Muscle	Colon
50	chr15:41035800-41039800	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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