Variant report

Variant	rs74014709
Chromosome Location	chr15:41215007-41215008
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:41199026..41201561-chr15:41213359..41216061,2	MCF-7	breast:
2	chr15:41212425..41217996-chr15:41220286..41224266,7	MCF-7	breast:
3	chr15:41209031..41211718-chr15:41213584..41216163,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000128917	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28436138	1.00[AMR][1000 genomes]
rs55851751	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57022654	1.00[AMR][1000 genomes]
rs58893179	1.00[AMR][1000 genomes]
rs59096643	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59204074	1.00[AMR][1000 genomes]
rs61336574	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7162253	1.00[AMR][1000 genomes]
rs74011889	1.00[AMR][1000 genomes]
rs74011890	1.00[AMR][1000 genomes]
rs74011893	1.00[AMR][1000 genomes]
rs74014710	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8030883	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904101	chr15:40979651-41275014	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	esv1819092	chr15:41017682-41255750	Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
3	nsv904103	chr15:41123172-41275014	Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv904104	chr15:41149824-41234932	Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv904105	chr15:41149824-41275014	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
6	esv1819792	chr15:41184722-41234825	Weak transcription Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41209600-41215800	Enhancers	Fetal Intestine Large	intestine
2	chr15:41209800-41216000	Enhancers	Fetal Intestine Small	intestine
3	chr15:41211600-41218000	Weak transcription	Right Atrium	heart
4	chr15:41211800-41218200	Weak transcription	Brain Anterior Caudate	brain
5	chr15:41214000-41215600	Enhancers	Duodenum Mucosa	Duodenum
6	chr15:41214400-41215200	Enhancers	Liver	Liver
7	chr15:41214400-41215200	Flanking Bivalent TSS/Enh	HepG2	liver
8	chr15:41214400-41215600	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr15:41214400-41215800	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr15:41214600-41215400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
11	chr15:41214600-41215800	Enhancers	Colonic Mucosa	Colon
12	chr15:41214600-41216600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr15:41214600-41216600	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr15:41214800-41215200	Enhancers	Placenta	Placenta
15	chr15:41214800-41215200	Enhancers	Right Ventricle	heart
16	chr15:41214800-41215200	Enhancers	Stomach Mucosa	stomach
17	chr15:41214800-41215400	Enhancers	Small Intestine	intestine
18	chr15:41214800-41215800	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
19	chr15:41214800-41216600	Enhancers	Lung	lung
20	chr15:41214800-41216800	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr15:41215000-41215200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
22	chr15:41215000-41215400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:41215000-41215400	Enhancers	Adipose Nuclei	Adipose
24	chr15:41215000-41215800	Enhancers	Fetal Muscle Leg	muscle

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