Variant report

Variant	rs56282449
Chromosome Location	chr15:40803862-40803863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:40768341..40769878-chr15:40802336..40804015,2	MCF-7	breast:
2	chr15:40768530..40771380-chr15:40802476..40804326,2	K562	blood:
3	chr15:40802752..40805307-chr15:40819242..40820883,2	K562	blood:
4	chr15:40789702..40793899-chr15:40802454..40805435,6	K562	blood:
5	chr15:40797459..40799431-chr15:40802673..40805643,2	K562	blood:
6	chr15:40730812..40733256-chr15:40803333..40806622,3	K562	blood:
7	chr15:40762122..40764569-chr15:40802898..40805797,2	MCF-7	breast:
8	chr15:40790726..40793810-chr15:40802454..40804415,3	K562	blood:
9	chr15:40730812..40737363-chr15:40801226..40806622,9	K562	blood:
10	chr15:40763028..40765683-chr15:40802404..40803926,2	MCF-7	breast:
11	chr15:40800305..40802269-chr15:40802285..40805070,2	K562	blood:
12	chr15:40801534..40804191-chr15:40830855..40832642,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140320	Chromatin interaction
ENSG00000169105	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs57134155	0.91[AFR][1000 genomes]
rs58042425	0.89[AFR][1000 genomes]
rs58903833	0.97[AFR][1000 genomes]
rs6492949	0.97[AFR][1000 genomes]
rs74011172	0.88[AFR][1000 genomes]
rs74011173	0.83[AFR][1000 genomes]
rs74011174	0.88[AFR][1000 genomes]
rs8034169	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34145	chr15:40549617-40889824	Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv832984	chr15:40794391-40998535	Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40802800-40804200	Bivalent Enhancer	Primary T helper memory cells from peripheral blood 1	blood
2	chr15:40803000-40804200	Bivalent Enhancer	Primary T helper naive cells from peripheral blood	blood
3	chr15:40803200-40804000	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr15:40803200-40804200	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
5	chr15:40803200-40804200	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
6	chr15:40803200-40804200	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:40803200-40804200	Bivalent/Poised TSS	Fetal Intestine Large	intestine
8	chr15:40803200-40804400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
9	chr15:40803200-40804400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr15:40803200-40804400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:40803200-40804400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:40803200-40804400	Flanking Active TSS	Adipose Nuclei	Adipose
13	chr15:40803200-40804400	Active TSS	Brain Angular Gyrus	brain
14	chr15:40803200-40804400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
15	chr15:40803200-40804400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
16	chr15:40803200-40804600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
17	chr15:40803200-40804600	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr15:40803200-40804600	Active TSS	Rectal Smooth Muscle	rectum
19	chr15:40803200-40804600	Flanking Active TSS	Stomach Smooth Muscle	stomach
20	chr15:40803400-40804000	Flanking Bivalent TSS/Enh	Primary Natural Killer cells fromperipheralblood	blood
21	chr15:40803400-40804000	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:40803400-40804000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
23	chr15:40803400-40804000	Flanking Active TSS	Lung	lung
24	chr15:40803400-40804000	Flanking Active TSS	HUVEC	blood vessel
25	chr15:40803400-40804000	Bivalent/Poised TSS	Osteobl	bone
26	chr15:40803400-40804200	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr15:40803400-40804200	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr15:40803400-40804200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr15:40803400-40804200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr15:40803400-40804200	Flanking Active TSS	Primary B cells from cord blood	blood
31	chr15:40803400-40804200	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
32	chr15:40803400-40804200	Bivalent/Poised TSS	Primary T helper naive cells fromperipheralblood	blood
33	chr15:40803400-40804200	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
34	chr15:40803400-40804200	Active TSS	Brain Hippocampus Middle	brain
35	chr15:40803400-40804200	Active TSS	Left Ventricle	heart
36	chr15:40803400-40804200	Flanking Active TSS	Placenta Amnion	Placenta Amnion
37	chr15:40803400-40804200	Active TSS	Psoas Muscle	Psoas
38	chr15:40803400-40804200	Bivalent/Poised TSS	Stomach Mucosa	stomach
39	chr15:40803400-40804200	Flanking Bivalent TSS/Enh	Thymus	Thymus
40	chr15:40803400-40804200	Active TSS	NHLF	lung
41	chr15:40803400-40804400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
42	chr15:40803400-40804400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
43	chr15:40803400-40804400	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:40803400-40804400	Flanking Bivalent TSS/Enh	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr15:40803400-40804400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
46	chr15:40803400-40804400	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
47	chr15:40803400-40804400	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:40803400-40804400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
49	chr15:40803400-40804400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr15:40803400-40804400	Flanking Bivalent TSS/Enh	Primary mononuclear cells fromperipheralblood	Blood

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