Variant report

Variant	rs3761091
Chromosome Location	chr19:36145428-36145429
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36144777..36146327-chr19:36149636..36151257,2	K562	blood:
2	chr19:36134484..36137044-chr19:36144183..36145802,3	K562	blood:
3	chr19:36137883..36140134-chr19:36145148..36147083,3	K562	blood:
4	chr19:36137883..36140667-chr19:36145148..36147341,4	K562	blood:
5	chr19:36133838..36136832-chr19:36145196..36147862,2	MCF-7	breast:
6	chr19:36139143..36141150-chr19:36143330..36145702,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126267	Chromatin interaction
ENSG00000105672	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11879586	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11882473	1.00[AMR][1000 genomes]
rs11882598	1.00[AMR][1000 genomes]
rs11883199	1.00[AMR][1000 genomes]
rs2239948	1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs2242524	1.00[CHB][hapmap];0.82[CHD][hapmap];0.82[JPT][hapmap]
rs2267587	1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[ASN][1000 genomes]
rs35399814	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3761090	1.00[CHB][hapmap];0.87[CHD][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes]
rs3787052	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1060100	chr19:35658505-36170042	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv543993	chr19:35658505-36170042	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
4	nsv543995	chr19:36139204-36203592	Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3761091	LIN37	cis	lymphoblastoid	seeQTL

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36140000-36147800	Weak transcription	Aorta	Aorta
2	chr19:36140000-36148800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr19:36140000-36154000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr19:36140200-36152800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr19:36140400-36146000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr19:36140400-36146600	Weak transcription	Fetal Brain Male	brain
7	chr19:36140400-36149200	Weak transcription	Small Intestine	intestine
8	chr19:36140400-36151600	Weak transcription	Stomach Mucosa	stomach
9	chr19:36140400-36164000	Weak transcription	Right Atrium	heart
10	chr19:36140600-36150400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr19:36140600-36153800	Strong transcription	Fetal Intestine Small	intestine
12	chr19:36140600-36157200	Strong transcription	Fetal Stomach	stomach
13	chr19:36140800-36153800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr19:36141000-36155600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr19:36141000-36157000	Strong transcription	Fetal Muscle Trunk	muscle
16	chr19:36141400-36156800	Strong transcription	Spleen	Spleen
17	chr19:36141400-36157200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr19:36141600-36147000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr19:36141600-36151200	Strong transcription	HUES48 Cell Line	embryonic stem cell
20	chr19:36141600-36152600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr19:36141800-36150200	Strong transcription	HUES64 Cell Line	embryonic stem cell
22	chr19:36141800-36151200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr19:36141800-36152800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
24	chr19:36141800-36153000	Strong transcription	H9 Cell Line	embryonic stem cell
25	chr19:36141800-36154000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr19:36141800-36156800	Strong transcription	Fetal Thymus	thymus
27	chr19:36142000-36151200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr19:36142000-36151400	Strong transcription	Lung	lung
29	chr19:36142000-36152200	Strong transcription	Primary neutrophils fromperipheralblood	blood
30	chr19:36142200-36151200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr19:36142200-36156800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr19:36142200-36156800	Strong transcription	Left Ventricle	heart
33	chr19:36142200-36157800	Weak transcription	Fetal Heart	heart
34	chr19:36142400-36152800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr19:36142800-36152800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr19:36142800-36157200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr19:36143000-36147200	Weak transcription	GM12878-XiMat	blood
38	chr19:36143000-36153800	Strong transcription	Primary T helper cells fromperipheralblood	blood
39	chr19:36143600-36156000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr19:36144400-36156800	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr19:36144600-36149600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr19:36144600-36149800	Strong transcription	Duodenum Mucosa	Duodenum
43	chr19:36144600-36150200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr19:36144600-36150200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr19:36144600-36150200	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr19:36144600-36150800	Strong transcription	Liver	Liver
47	chr19:36144600-36151000	Strong transcription	Dnd41	blood
48	chr19:36144600-36151200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr19:36144600-36151200	Strong transcription	Adipose Nuclei	Adipose
50	chr19:36144600-36151200	Strong transcription	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links