Variant report

Variant	rs11883199
Chromosome Location	chr19:36284451-36284452
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr19:36278394..36281474-chr19:36283077..36286266,3	K562	blood:
2	chr19:36273138..36275777-chr19:36283531..36286401,2	K562	blood:
3	chr19:36281922..36284549-chr19:36300650..36302438,2	K562	blood:
4	chr19:36278394..36281152-chr19:36283077..36286446,4	K562	blood:

Variant related genes	Relation type
ENSG00000004777	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11879586	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs11882473	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11882598	1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35399814	1.00[AMR][1000 genomes]
rs3761091	1.00[AMR][1000 genomes]
rs3888030	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432045	chr19:35556260-36520760	Flanking Active TSS Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv911630	chr19:36149761-36290977	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	69 gene(s)	inside rSNPs	diseases
3	nsv911631	chr19:36169285-36290977	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
4	nsv911632	chr19:36174176-36288297	Strong transcription Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
5	nsv911634	chr19:36206050-36290977	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	61 gene(s)	inside rSNPs	diseases
6	nsv911636	chr19:36240960-36290977	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv911637	chr19:36261928-36309321	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv911638	chr19:36265508-36537959	Enhancers Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
9	esv3446624	chr19:36282645-36318788	Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:36273600-36288000	Weak transcription	Brain Angular Gyrus	brain
2	chr19:36277400-36288200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr19:36277600-36284800	Weak transcription	Gastric	stomach
4	chr19:36278400-36288000	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr19:36278400-36294400	Weak transcription	Spleen	Spleen
6	chr19:36278600-36284600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:36279000-36285000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr19:36279200-36284800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:36279200-36285000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr19:36279400-36285800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr19:36281000-36285600	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr19:36281200-36287200	Weak transcription	Fetal Brain Female	brain
13	chr19:36281200-36287600	Weak transcription	Brain Germinal Matrix	brain
14	chr19:36282600-36284800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr19:36282600-36285200	Enhancers	Stomach Mucosa	stomach
16	chr19:36283400-36303000	Weak transcription	Pancreas	Pancrea
17	chr19:36284000-36285000	Enhancers	HepG2	liver
18	chr19:36284000-36285200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr19:36284000-36285200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr19:36284000-36285200	Enhancers	NHDF-Ad	bronchial
21	chr19:36284200-36284600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr19:36284200-36284800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr19:36284200-36284800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr19:36284200-36284800	Enhancers	Duodenum Mucosa	Duodenum
25	chr19:36284200-36285000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr19:36284200-36285000	Enhancers	NHLF	lung
27	chr19:36284200-36288000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr19:36284400-36284600	Enhancers	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links