Variant report

Variant	rs376224842
Chromosome Location	chr1:169543861-169543862
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv548187	chr1:169530837-169559035	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv872534	chr1:169533266-169561274	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv872536	chr1:169538466-169547610	Active TSS Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv872537	chr1:169538603-169547610	Enhancers Flanking Active TSS Genic enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	esv3402958	chr1:169543847-169544054	Weak transcription Strong transcription Enhancers Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169533200-169551600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr1:169533400-169544600	Enhancers	Stomach Mucosa	stomach
3	chr1:169540200-169547200	Genic enhancers	HepG2	liver
4	chr1:169541600-169550400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr1:169542000-169544600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr1:169542000-169550400	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr1:169542200-169554800	Weak transcription	Placenta	Placenta
8	chr1:169542800-169548000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr1:169543000-169545600	Weak transcription	Right Ventricle	heart
10	chr1:169543400-169545200	Genic enhancers	Liver	Liver
11	chr1:169543400-169545400	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr1:169543800-169544000	Enhancers	Adipose Nuclei	Adipose
13	chr1:169543800-169544200	Weak transcription	Right Atrium	heart
14	chr1:169543800-169544400	Weak transcription	Left Ventricle	heart
15	chr1:169543800-169554200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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