Variant report

Variant	rs3762907
Chromosome Location	chr4:152682802-152682803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MTA3	chr4:152681834-152682834	GM12878	blood:	n/a	n/a
2	ESRRA	chr4:152681352-152683331	GM12878	blood:	n/a	chr4:152682488-152682498 chr4:152682488-152682498 chr4:152682484-152682500 chr4:152683015-152683031 chr4:152682487-152682500 chr4:152682488-152682500
3	SREBP1	chr4:152680936-152683044	GM12878	blood:	n/a	chr4:152682153-152682162 chr4:152682153-152682162
4	MXI1	chr4:152681285-152682910	SK-N-SH	brain:	n/a	n/a
5	HCFC1	chr4:152681492-152682932	Hela-S3	cervix:	n/a	n/a
6	SMC3	chr4:152682006-152683044	GM12878	blood:	n/a	n/a
7	POLR2A	chr4:152681211-152682918	PBDE	blood:	n/a	n/a
8	CBX3	chr4:152681967-152682811	K562	blood:	n/a	n/a
9	MTA3	chr4:152681661-152682819	GM12878	blood:	n/a	n/a
10	JUN	chr4:152681410-152682812	K562	blood:	n/a	chr4:152682157-152682167 chr4:152682158-152682166 chr4:152682482-152682491 chr4:152682157-152682167 chr4:152682157-152682167
11	RCOR1	chr4:152681743-152682826	GM12878	blood:	n/a	n/a
12	POLR2A	chr4:152681116-152682928	MCF10A-Er-Src	breast:	n/a	n/a
13	TBP	chr4:152681973-152682829	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
PET112	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12509425	0.84[EUR][1000 genomes]
rs12512066	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv4552	chr4:152681211-152702457	Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv964732	chr4:152682015-152696175	Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152681000-152683000	Active TSS	HepG2	liver
2	chr4:152681600-152683000	Active TSS	Brain Cingulate Gyrus	brain
3	chr4:152681800-152683000	Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr4:152682400-152683000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr4:152682400-152683000	Flanking Active TSS	GM12878-XiMat	blood
6	chr4:152682600-152683000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr4:152682600-152684400	Weak transcription	Left Ventricle	heart
8	chr4:152682800-152683000	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr4:152682800-152683000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr4:152682800-152683000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr4:152682800-152683000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr4:152682800-152683000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:152682800-152683000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr4:152682800-152683000	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:152682800-152683000	Active TSS	Duodenum Mucosa	Duodenum
16	chr4:152682800-152683000	Enhancers	Fetal Brain Male	brain
17	chr4:152682800-152683000	Enhancers	Hela-S3	cervix
18	chr4:152682800-152683000	Enhancers	HMEC	breast
19	chr4:152682800-152683000	Enhancers	K562	blood
20	chr4:152682800-152683000	Enhancers	NHEK	skin
21	chr4:152682800-152683000	Enhancers	Osteobl	bone
22	chr4:152682800-152683200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr4:152682800-152683200	Enhancers	Dnd41	blood
24	chr4:152682800-152684000	Enhancers	Fetal Heart	heart
25	chr4:152682800-152684400	Weak transcription	Fetal Brain Female	brain

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