Variant report

Variant	rs12509425
Chromosome Location	chr4:152569864-152569865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152568195..152570506-chr4:152573252..152576175,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10021998	0.85[EUR][1000 genomes]
rs12505163	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap]
rs17027689	0.84[ASN][1000 genomes]
rs28505227	0.87[EUR][1000 genomes]
rs3762907	0.84[EUR][1000 genomes]
rs7663615	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs7685383	0.87[EUR][1000 genomes]
rs9631757	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152544000-152570600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr4:152544400-152570600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr4:152545600-152578600	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:152546400-152570600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:152551000-152570800	Weak transcription	Lung	lung
6	chr4:152551000-152570800	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:152554000-152573800	Weak transcription	Psoas Muscle	Psoas
8	chr4:152561000-152570600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:152561000-152579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr4:152561400-152570600	Weak transcription	Gastric	stomach
11	chr4:152562600-152570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:152562600-152577400	Weak transcription	HMEC	breast
13	chr4:152562800-152570200	Weak transcription	NHEK	skin
14	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
15	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
16	chr4:152565600-152572600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr4:152565800-152570800	Weak transcription	Ovary	ovary
18	chr4:152566000-152577200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:152566200-152570400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr4:152566400-152570600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr4:152567000-152571000	Weak transcription	Fetal Stomach	stomach
22	chr4:152567200-152571800	Strong transcription	Duodenum Mucosa	Duodenum
23	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
25	chr4:152568000-152570600	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr4:152568000-152570600	Weak transcription	Fetal Intestine Small	intestine
27	chr4:152568200-152571600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:152568200-152577800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:152568400-152570000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:152568600-152570400	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr4:152568600-152570400	Weak transcription	Pancreas	Pancrea
32	chr4:152568600-152570600	Weak transcription	Esophagus	oesophagus
33	chr4:152568600-152570600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr4:152568600-152570800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:152568600-152577200	Weak transcription	Colonic Mucosa	Colon
36	chr4:152569000-152570800	Weak transcription	Fetal Intestine Large	intestine
37	chr4:152569200-152570200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:152569200-152570800	Weak transcription	Liver	Liver
39	chr4:152569200-152571000	Weak transcription	HepG2	liver
40	chr4:152569200-152572200	Weak transcription	Skeletal Muscle Female	skeletal muscle
41	chr4:152569400-152570600	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr4:152569800-152571800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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