Variant report

Variant	rs10021998
Chromosome Location	chr4:152560662-152560663
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10155290	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12505163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12509425	0.85[EUR][1000 genomes]
rs1443093	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28665936	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7663615	0.82[CEU][hapmap];0.93[CHB][hapmap];0.89[YRI][hapmap];0.96[EUR][1000 genomes]
rs9631757	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152499200-152567600	Weak transcription	Pancreas	Pancrea
2	chr4:152542400-152565600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr4:152544000-152570600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr4:152544200-152566400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:152544400-152570600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr4:152545600-152578600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr4:152546400-152561800	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:152546400-152570600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:152549000-152567000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:152549200-152561600	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:152549200-152562000	Weak transcription	NHEK	skin
12	chr4:152549400-152562200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:152550600-152567600	Weak transcription	Fetal Intestine Small	intestine
14	chr4:152551000-152570800	Weak transcription	Lung	lung
15	chr4:152551000-152570800	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:152553400-152565600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr4:152554000-152573800	Weak transcription	Psoas Muscle	Psoas
18	chr4:152559000-152562000	Weak transcription	HMEC	breast
19	chr4:152559400-152562000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr4:152559600-152567200	Weak transcription	Duodenum Mucosa	Duodenum
21	chr4:152559600-152567600	Weak transcription	Colonic Mucosa	Colon
22	chr4:152560200-152561000	Strong transcription	Rectal Mucosa Donor 31	rectum
23	chr4:152560400-152561200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:152560400-152563800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:152560600-152561400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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