Variant report

Variant	rs9631757
Chromosome Location	chr4:152567239-152567240
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152566191..152568403-chr4:152585457..152588104,2	K562	blood:
2	chr4:152451680..152452632-chr4:152566818..152567655,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10021998	0.82[AFR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10155290	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12505163	1.00[CHB][hapmap];0.94[JPT][hapmap];0.80[YRI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12509425	0.82[EUR][1000 genomes]
rs1443093	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28665936	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7663615	0.82[CEU][hapmap];0.93[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152499200-152567600	Weak transcription	Pancreas	Pancrea
2	chr4:152544000-152570600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr4:152544400-152570600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:152545600-152578600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr4:152546400-152570600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:152550600-152567600	Weak transcription	Fetal Intestine Small	intestine
7	chr4:152551000-152570800	Weak transcription	Lung	lung
8	chr4:152551000-152570800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:152554000-152573800	Weak transcription	Psoas Muscle	Psoas
10	chr4:152559600-152567600	Weak transcription	Colonic Mucosa	Colon
11	chr4:152561000-152567600	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr4:152561000-152570600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:152561000-152579400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:152561400-152570600	Weak transcription	Gastric	stomach
15	chr4:152562600-152567800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr4:152562600-152570400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:152562600-152577400	Weak transcription	HMEC	breast
18	chr4:152562800-152570200	Weak transcription	NHEK	skin
19	chr4:152563800-152567800	Weak transcription	Skeletal Muscle Female	skeletal muscle
20	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
21	chr4:152564200-152595200	Weak transcription	Aorta	Aorta
22	chr4:152565600-152572600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:152565800-152568200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr4:152565800-152570800	Weak transcription	Ovary	ovary
25	chr4:152566000-152567800	Weak transcription	Esophagus	oesophagus
26	chr4:152566000-152577200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr4:152566200-152567600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr4:152566200-152567800	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr4:152566200-152570400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr4:152566400-152570600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr4:152566600-152567800	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr4:152567000-152567400	Enhancers	iPS-20b Cell Line	embryonic stem cell
33	chr4:152567000-152568600	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr4:152567000-152569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr4:152567000-152571000	Weak transcription	Fetal Stomach	stomach
36	chr4:152567200-152567800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr4:152567200-152567800	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr4:152567200-152568000	Enhancers	HUES64 Cell Line	embryonic stem cell
39	chr4:152567200-152568400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:152567200-152571800	Strong transcription	Duodenum Mucosa	Duodenum

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