Variant report

Variant	rs7663615
Chromosome Location	chr4:152595538-152595539
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:152595145-152595546	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F4	chr4:152595527-152595561	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152586811..152588784-chr4:152594944..152597793,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251455	TF binding region
ENSG00000251603	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10021998	0.96[EUR][1000 genomes]
rs10155290	0.86[EUR][1000 genomes]
rs12505163	1.00[CEU][hapmap];0.93[CHB][hapmap];0.86[EUR][1000 genomes]
rs12509425	0.82[EUR][1000 genomes]
rs1443093	0.82[EUR][1000 genomes]
rs2048433	0.81[ASN][1000 genomes]
rs28665936	0.83[EUR][1000 genomes]
rs9631757	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755535	chr4:152549395-152609395	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv4551	chr4:152582617-152627367	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1026511	chr4:152593382-152611915	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152563800-152625200	Weak transcription	Hela-S3	cervix
2	chr4:152567400-152608600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr4:152567800-152609000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:152579200-152597400	Weak transcription	Liver	Liver
5	chr4:152580200-152596000	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr4:152580800-152595800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr4:152580800-152596800	Weak transcription	Primary T cells from cord blood	blood
8	chr4:152581200-152602800	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr4:152581200-152608400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:152581800-152595600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:152582400-152595800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr4:152583200-152596000	Weak transcription	Spleen	Spleen
13	chr4:152584800-152595800	Weak transcription	Fetal Intestine Large	intestine
14	chr4:152585200-152596000	Weak transcription	Colonic Mucosa	Colon
15	chr4:152585600-152628600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:152585800-152596200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:152585800-152600400	Weak transcription	Gastric	stomach
18	chr4:152585800-152640400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr4:152586000-152596600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr4:152586400-152609000	Weak transcription	Primary hematopoietic stem cells	blood
21	chr4:152588400-152596000	Weak transcription	Brain Germinal Matrix	brain
22	chr4:152588800-152595800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr4:152589200-152608800	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr4:152589200-152619200	Weak transcription	Dnd41	blood
25	chr4:152590000-152595800	Weak transcription	Brain Anterior Caudate	brain
26	chr4:152590000-152595800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr4:152590200-152596000	Weak transcription	HSMMtube	muscle
28	chr4:152590400-152595600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr4:152590400-152601600	Weak transcription	Primary B cells from cord blood	blood
30	chr4:152590600-152595800	Weak transcription	Brain Cingulate Gyrus	brain
31	chr4:152590600-152595800	Weak transcription	Fetal Kidney	kidney
32	chr4:152590600-152597600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr4:152590600-152609000	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr4:152590800-152596000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr4:152591200-152596000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr4:152591200-152597400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr4:152591200-152608600	Weak transcription	Primary T helper cells PMA-I stimulated	--
38	chr4:152591200-152646800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:152591400-152595800	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr4:152591800-152596000	Enhancers	Fetal Heart	heart
41	chr4:152592000-152595800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr4:152592000-152598200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr4:152592200-152596000	Enhancers	Right Ventricle	heart
44	chr4:152592200-152608000	Weak transcription	Thymus	Thymus
45	chr4:152592400-152597800	Enhancers	Left Ventricle	heart
46	chr4:152592600-152595800	Enhancers	Right Atrium	heart
47	chr4:152592600-152636400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr4:152593000-152595800	Weak transcription	Adipose Nuclei	Adipose
49	chr4:152593200-152595800	Weak transcription	Skeletal Muscle Male	skeletal muscle
50	chr4:152593200-152596000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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