Variant report

Variant	rs28665936
Chromosome Location	chr4:152545063-152545064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10021998	0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10155290	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505163	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1443093	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6825241	0.80[AFR][1000 genomes]
rs7663615	0.83[EUR][1000 genomes]
rs9631757	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880624	chr4:152280646-152549112	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv881342	chr4:152363772-152560449	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830114	chr4:152401288-152548606	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152499200-152567600	Weak transcription	Pancreas	Pancrea
2	chr4:152521600-152546200	Weak transcription	Right Ventricle	heart
3	chr4:152522400-152548400	Weak transcription	NHEK	skin
4	chr4:152522400-152560200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr4:152522600-152548400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:152528400-152548600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:152537200-152545400	Weak transcription	Right Atrium	heart
8	chr4:152540400-152545400	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr4:152540400-152545400	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr4:152540400-152546200	Weak transcription	Psoas Muscle	Psoas
11	chr4:152542400-152565600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:152542600-152545400	Weak transcription	Fetal Brain Male	brain
13	chr4:152544000-152545200	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr4:152544000-152570600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr4:152544200-152566400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:152544400-152545800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr4:152544400-152546600	Enhancers	Ovary	ovary
18	chr4:152544400-152547200	Weak transcription	HepG2	liver
19	chr4:152544400-152549000	Weak transcription	Fetal Heart	heart
20	chr4:152544400-152570600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:152544600-152546000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr4:152544600-152546200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr4:152545000-152546400	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr4:152545000-152546400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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