Variant report

Variant	rs3762930
Chromosome Location	chr4:26338978-26338979
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26323634..26325671-chr4:26338487..26340718,2	K562	blood:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13109842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13135696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13144326	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13148482	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17639483	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1877207	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2725304	1.00[YRI][hapmap]
rs2725305	0.96[YRI][hapmap]
rs2725309	0.94[YRI][hapmap]
rs28465688	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109843	0.80[YRI][hapmap]
rs3109849	0.93[YRI][hapmap]
rs3113016	0.86[YRI][hapmap]
rs34388070	0.82[ASN][1000 genomes]
rs35323831	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692523	0.80[EUR][1000 genomes]
rs56352330	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7655165	0.81[YRI][hapmap]

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26325600-26343600	Weak transcription	Primary T cells from cord blood	blood
4	chr4:26325800-26343000	Weak transcription	Fetal Stomach	stomach
5	chr4:26326000-26341600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr4:26326000-26344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:26326600-26339600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:26328800-26343600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:26329000-26341800	Weak transcription	GM12878-XiMat	blood
10	chr4:26329000-26343200	Weak transcription	HMEC	breast
11	chr4:26329000-26343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:26329400-26342800	Weak transcription	NHEK	skin
13	chr4:26330600-26342600	Weak transcription	NHLF	lung
14	chr4:26332400-26343600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:26332600-26342000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:26332600-26343800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr4:26333000-26341000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr4:26333000-26341400	Weak transcription	Placenta	Placenta
19	chr4:26333000-26341800	Weak transcription	HSMM	muscle
20	chr4:26333000-26343200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:26333000-26343600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:26333000-26343600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr4:26333000-26343600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:26333000-26343600	Weak transcription	Fetal Brain Female	brain
25	chr4:26333400-26340600	Weak transcription	Ovary	ovary
26	chr4:26333400-26341800	Weak transcription	Spleen	Spleen
27	chr4:26333400-26342800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr4:26333400-26342800	Weak transcription	Right Atrium	heart
29	chr4:26333400-26343000	Weak transcription	Pancreas	Pancrea
30	chr4:26333400-26343400	Weak transcription	Aorta	Aorta
31	chr4:26333400-26343600	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:26333400-26343800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr4:26333600-26340000	Weak transcription	Stomach Mucosa	stomach
35	chr4:26333600-26342800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr4:26333600-26342800	Weak transcription	Small Intestine	intestine
37	chr4:26333600-26343000	Weak transcription	Left Ventricle	heart
38	chr4:26333600-26343400	Weak transcription	Adipose Nuclei	Adipose
39	chr4:26333600-26343600	Weak transcription	Brain Germinal Matrix	brain
40	chr4:26333600-26347200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr4:26333800-26341800	Weak transcription	Brain Substantia Nigra	brain
42	chr4:26333800-26342600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
43	chr4:26333800-26343200	Weak transcription	Osteobl	bone
44	chr4:26334000-26339000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr4:26334000-26343400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:26334000-26343400	Weak transcription	Brain Angular Gyrus	brain
47	chr4:26334000-26344600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr4:26334400-26341200	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr4:26334600-26341400	Weak transcription	Brain Hippocampus Middle	brain
50	chr4:26334600-26342800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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