Variant report

Variant	rs1877207
Chromosome Location	chr4:26332690-26332691
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26323720..26325318-chr4:26331825..26334750,2	K562	blood:
2	chr4:26331672..26333211-chr4:26335097..26337587,2	K562	blood:
3	chr4:26320966..26322729-chr4:26331935..26333444,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10939111	0.80[ASW][hapmap];1.00[YRI][hapmap]
rs11722744	0.86[ASW][hapmap];1.00[YRI][hapmap]
rs11727747	1.00[YRI][hapmap]
rs12639629	1.00[YRI][hapmap]
rs13109842	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13114911	0.80[ASW][hapmap];1.00[YRI][hapmap]
rs13115260	1.00[YRI][hapmap]
rs13119840	1.00[YRI][hapmap]
rs13128014	1.00[YRI][hapmap]
rs13128399	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13133397	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13135696	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13144326	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13148482	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17639483	0.89[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs28465688	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34388070	0.82[ASN][1000 genomes]
rs35323831	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3762930	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4536914	1.00[YRI][hapmap]
rs4692523	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4692532	1.00[YRI][hapmap]
rs56035229	0.81[AFR][1000 genomes]
rs56352330	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56795036	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26333000	Weak transcription	Small Intestine	intestine
2	chr4:26323800-26374400	Weak transcription	Lung	lung
3	chr4:26324000-26332800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:26324000-26332800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr4:26324000-26332800	Weak transcription	Pancreas	Pancrea
6	chr4:26324000-26332800	Weak transcription	Spleen	Spleen
7	chr4:26324200-26332800	Weak transcription	Right Ventricle	heart
8	chr4:26324600-26333200	Weak transcription	Thymus	Thymus
9	chr4:26325000-26334200	Weak transcription	Fetal Intestine Small	intestine
10	chr4:26325000-26338000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
12	chr4:26325600-26343600	Weak transcription	Primary T cells from cord blood	blood
13	chr4:26325800-26333200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr4:26325800-26343000	Weak transcription	Fetal Stomach	stomach
15	chr4:26326000-26341600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr4:26326000-26344200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:26326600-26339600	Weak transcription	Fetal Muscle Trunk	muscle
18	chr4:26328800-26332800	Weak transcription	Right Atrium	heart
19	chr4:26328800-26343600	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:26329000-26335200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr4:26329000-26341800	Weak transcription	GM12878-XiMat	blood
22	chr4:26329000-26343200	Weak transcription	HMEC	breast
23	chr4:26329000-26343400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr4:26329400-26342800	Weak transcription	NHEK	skin
25	chr4:26330600-26342600	Weak transcription	NHLF	lung
26	chr4:26330800-26332800	Weak transcription	Ovary	ovary
27	chr4:26331000-26332800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:26331600-26333400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr4:26331600-26334000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr4:26331800-26333600	Enhancers	Primary T helper cells PMA-I stimulated	--
31	chr4:26331800-26333800	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chr4:26331800-26333800	Enhancers	Brain Substantia Nigra	brain
33	chr4:26331800-26333800	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr4:26331800-26333800	Enhancers	NHDF-Ad	bronchial
35	chr4:26331800-26334000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr4:26331800-26334000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr4:26332000-26332800	Flanking Active TSS	Brain Hippocampus Middle	brain
38	chr4:26332000-26333000	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr4:26332000-26333200	Enhancers	NH-A	brain
40	chr4:26332000-26333200	Enhancers	Osteobl	bone
41	chr4:26332000-26333400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
42	chr4:26332000-26333600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr4:26332000-26333600	Enhancers	Brain Germinal Matrix	brain
44	chr4:26332000-26333600	Enhancers	Fetal Lung	lung
45	chr4:26332000-26333800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr4:26332000-26333800	Enhancers	HepG2	liver
47	chr4:26332200-26332800	Enhancers	H9 Cell Line	embryonic stem cell
48	chr4:26332200-26332800	Weak transcription	Primary B cells from cord blood	blood
49	chr4:26332200-26332800	Flanking Active TSS	Brain Anterior Caudate	brain
50	chr4:26332200-26333000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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