Variant report

Variant	rs13133397
Chromosome Location	chr4:26346652-26346653
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10805262	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10939111	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722108	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11722744	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11726853	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11727747	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11737637	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12639629	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs12643747	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12648802	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13104136	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13104403	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13108863	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13109703	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13111856	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13114911	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115260	0.96[CEU][hapmap];0.84[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13116044	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13116873	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13118463	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13119840	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13120216	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13125386	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13128014	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13129276	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13134710	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13135156	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13135696	0.95[YRI][hapmap]
rs13139277	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13139997	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13140860	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13147671	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13152066	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16867798	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1877207	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs2095830	0.82[AMR][1000 genomes]
rs2270226	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2725303	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725304	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[JPT][hapmap];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725305	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725309	1.00[CEU][hapmap];0.85[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2725325	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28368332	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3109839	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3109843	0.95[CEU][hapmap];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3109849	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3113016	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3113019	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35142730	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4289434	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4536914	0.96[CEU][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4692531	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4692532	0.96[CEU][hapmap];0.90[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56795036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59191689	0.87[AMR][1000 genomes]
rs7349722	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7655165	0.96[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7656190	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:26333600-26347200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:26342000-26350400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:26342400-26347600	Enhancers	HSMM	muscle
7	chr4:26343000-26348800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:26343200-26347000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:26343200-26347400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr4:26343400-26356600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr4:26343600-26357200	Weak transcription	Gastric	stomach
12	chr4:26343800-26347800	Weak transcription	Left Ventricle	heart
13	chr4:26343800-26349000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr4:26344000-26347200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:26344200-26346800	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr4:26344200-26347000	Weak transcription	Stomach Mucosa	stomach
17	chr4:26344200-26347200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:26344200-26347200	Weak transcription	Fetal Muscle Leg	muscle
19	chr4:26344200-26347200	Weak transcription	Right Atrium	heart
20	chr4:26344200-26348000	Weak transcription	Ovary	ovary
21	chr4:26344200-26350200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:26344200-26350600	Weak transcription	Pancreas	Pancrea
23	chr4:26344200-26357400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:26344200-26357800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
27	chr4:26344400-26347000	Weak transcription	Primary T helper cells fromperipheralblood	blood
28	chr4:26344400-26352200	Weak transcription	Primary T cells from cord blood	blood
29	chr4:26344400-26353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
30	chr4:26344400-26357600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr4:26344600-26347200	Weak transcription	Stomach Smooth Muscle	stomach
32	chr4:26344800-26347000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr4:26344800-26347000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr4:26344800-26347000	Weak transcription	K562	blood
35	chr4:26344800-26347200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr4:26344800-26347400	Enhancers	NHLF	lung
37	chr4:26344800-26350600	Weak transcription	Right Ventricle	heart
38	chr4:26344800-26368000	Weak transcription	Fetal Intestine Small	intestine
39	chr4:26345000-26346800	Enhancers	NHDF-Ad	bronchial
40	chr4:26345000-26347000	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:26345000-26347200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
42	chr4:26345000-26347200	Weak transcription	Fetal Kidney	kidney
43	chr4:26345000-26347400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr4:26345000-26347400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr4:26345000-26348200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr4:26345000-26357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
47	chr4:26345200-26346800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:26345200-26346800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr4:26345200-26347000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:26345200-26347200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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