Variant report

Variant	rs12639629
Chromosome Location	chr4:26414770-26414771
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26320713..26323775-chr4:26414694..26418246,3	MCF-7	breast:
2	chr4:26369940..26371880-chr4:26414049..26416556,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10805262	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs10939111	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11722108	0.82[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs11722744	0.96[CEU][hapmap];1.00[YRI][hapmap];0.95[EUR][1000 genomes]
rs11726853	1.00[CEU][hapmap];0.87[CHB][hapmap];0.97[EUR][1000 genomes]
rs11727213	0.85[EUR][1000 genomes]
rs11727747	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs11729843	0.83[EUR][1000 genomes]
rs11737637	0.94[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs12643747	0.92[EUR][1000 genomes]
rs12648802	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs13104136	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13104403	0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13108863	0.92[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs13109703	0.93[CEU][hapmap];0.83[CHB][hapmap];0.97[EUR][1000 genomes]
rs13111856	0.98[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs13114911	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs13115260	1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13116044	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs13116873	0.95[EUR][1000 genomes]
rs13118463	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13119840	0.96[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13120216	0.96[EUR][1000 genomes]
rs13125386	0.88[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs13128014	0.96[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13129276	0.85[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs13133397	0.96[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];0.92[EUR][1000 genomes]
rs13134710	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs13135156	0.99[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs13135696	0.95[YRI][hapmap]
rs13139277	0.93[EUR][1000 genomes]
rs13139997	0.93[EUR][1000 genomes]
rs13140860	0.96[EUR][1000 genomes]
rs13147671	1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[YRI][hapmap];0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs13152066	0.96[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs16867798	0.90[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs1877207	1.00[YRI][hapmap]
rs2095830	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2270226	0.99[EUR][1000 genomes]
rs2725303	0.96[CEU][hapmap];0.87[CHB][hapmap];0.93[EUR][1000 genomes]
rs2725304	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs2725305	0.96[CEU][hapmap];0.86[CHB][hapmap];0.93[EUR][1000 genomes]
rs2725309	0.96[CEU][hapmap];0.92[EUR][1000 genomes]
rs2725325	1.00[CEU][hapmap];0.83[CHB][hapmap];0.93[EUR][1000 genomes]
rs28368332	0.99[EUR][1000 genomes]
rs3109839	0.92[CEU][hapmap];0.90[CHB][hapmap];0.98[EUR][1000 genomes]
rs3109843	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs3109849	1.00[CEU][hapmap];0.87[CHB][hapmap];0.98[EUR][1000 genomes]
rs3113016	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[EUR][1000 genomes]
rs3113019	0.89[EUR][1000 genomes]
rs35142730	0.96[EUR][1000 genomes]
rs4289434	1.00[CEU][hapmap];0.83[CHB][hapmap];0.94[EUR][1000 genomes]
rs4536914	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs4692531	0.90[EUR][1000 genomes]
rs4692532	1.00[CEU][hapmap];0.83[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs56795036	0.93[EUR][1000 genomes]
rs59191689	0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs7349722	0.96[CEU][hapmap];0.87[CHB][hapmap];0.99[EUR][1000 genomes]
rs7655165	1.00[CEU][hapmap];0.83[CHB][hapmap];0.92[EUR][1000 genomes]
rs7656190	0.93[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
3	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:26399800-26437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:26403000-26424800	Weak transcription	Fetal Brain Female	brain
6	chr4:26404400-26436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr4:26404600-26418000	Weak transcription	Small Intestine	intestine
8	chr4:26408000-26439000	Weak transcription	Hela-S3	cervix
9	chr4:26408400-26422600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:26408400-26427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr4:26408400-26428400	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:26408400-26431000	Weak transcription	Fetal Kidney	kidney
13	chr4:26408400-26431400	Weak transcription	Esophagus	oesophagus
14	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
15	chr4:26408600-26416400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr4:26408600-26417400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:26408600-26418000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr4:26408600-26422200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:26408600-26422600	Weak transcription	Thymus	Thymus
20	chr4:26408600-26425800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr4:26408600-26426800	Weak transcription	Brain Germinal Matrix	brain
22	chr4:26408600-26430800	Weak transcription	HUVEC	blood vessel
23	chr4:26408600-26430800	Weak transcription	K562	blood
24	chr4:26408800-26415600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr4:26408800-26417400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr4:26408800-26417800	Weak transcription	HepG2	liver
27	chr4:26408800-26421600	Weak transcription	A549	lung
28	chr4:26408800-26421800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr4:26408800-26422200	Weak transcription	Primary B cells from peripheral blood	blood
30	chr4:26408800-26422200	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr4:26408800-26426600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
32	chr4:26408800-26432200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
33	chr4:26409000-26417000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr4:26409000-26417000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr4:26409000-26417200	Weak transcription	Fetal Intestine Large	intestine
36	chr4:26409000-26417200	Weak transcription	Rectal Mucosa Donor 29	rectum
37	chr4:26409000-26417200	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr4:26409000-26417400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:26409000-26422400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:26409000-26426000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:26409000-26431000	Weak transcription	NHEK	skin
42	chr4:26409000-26431600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:26409000-26431600	Weak transcription	HMEC	breast
44	chr4:26409200-26416800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr4:26409200-26416800	Weak transcription	Muscle Satellite Cultured Cells	--
46	chr4:26409400-26416800	Weak transcription	Primary T helper cells PMA-I stimulated	--
47	chr4:26409400-26416800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:26409600-26415600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr4:26409800-26423400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr4:26410000-26415800	Weak transcription	Dnd41	blood

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