Variant report

Variant	rs13120216
Chromosome Location	chr4:26440320-26440321
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26438899..26441461-chr4:26443781..26447435,3	K562	blood:
2	chr4:26439953..26442346-chr4:27061840..27063686,2	K562	blood:
3	chr4:26439053..26441508-chr4:26443087..26445412,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10805262	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10939111	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11722108	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11722744	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11726853	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11727213	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11727747	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11729843	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11737637	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12639629	0.96[EUR][1000 genomes]
rs12643747	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12648802	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13104136	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13104403	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13108863	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13109703	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13111856	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13114911	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13115260	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13116044	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13116873	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13118463	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13119840	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13125386	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13128014	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13129276	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13133397	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13134710	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13135156	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13139277	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13139997	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13140860	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147671	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13152066	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16867798	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2095830	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2270226	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725303	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725304	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2725305	0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725309	0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725325	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28368332	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3109839	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109843	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3109849	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3113016	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3113019	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35142730	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4289434	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4536914	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4692531	0.86[EUR][1000 genomes]
rs4692532	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56795036	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59191689	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7349722	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7655165	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7656190	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv11028	chr4:26438714-26441364	Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
2	chr4:26414600-26443000	Weak transcription	Fetal Brain Male	brain
3	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:26420200-26440600	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr4:26422200-26440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:26422200-26440800	Strong transcription	Primary neutrophils fromperipheralblood	blood
7	chr4:26422800-26441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr4:26423000-26442600	Weak transcription	Fetal Heart	heart
9	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
11	chr4:26424400-26440800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr4:26425200-26441800	Strong transcription	HUES6 Cell Line	embryonic stem cell
13	chr4:26425600-26442600	Weak transcription	Stomach Mucosa	stomach
14	chr4:26426200-26440600	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr4:26428600-26440600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
16	chr4:26428800-26442600	Weak transcription	Pancreas	Pancrea
17	chr4:26429000-26442800	Weak transcription	Psoas Muscle	Psoas
18	chr4:26431800-26444400	Weak transcription	Gastric	stomach
19	chr4:26431800-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:26432400-26441600	Weak transcription	HUVEC	blood vessel
21	chr4:26432400-26443400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr4:26432600-26442600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr4:26432600-26442600	Weak transcription	Brain Anterior Caudate	brain
24	chr4:26432600-26442800	Weak transcription	Esophagus	oesophagus
25	chr4:26432600-26442800	Weak transcription	Right Ventricle	heart
26	chr4:26432600-26444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr4:26432600-26445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr4:26432800-26442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr4:26433200-26440800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:26433600-26444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:26433800-26441800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr4:26433800-26444200	Weak transcription	HepG2	liver
33	chr4:26434400-26442600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr4:26434400-26443200	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:26434600-26442800	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:26434800-26442600	Weak transcription	Left Ventricle	heart
37	chr4:26434800-26442800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr4:26435000-26440400	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr4:26435000-26440600	Weak transcription	Rectal Mucosa Donor 29	rectum
40	chr4:26435000-26442800	Weak transcription	Duodenum Mucosa	Duodenum
41	chr4:26435600-26441600	Weak transcription	Liver	Liver
42	chr4:26436200-26442600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr4:26436200-26446000	Weak transcription	H1 Cell Line	embryonic stem cell
44	chr4:26436400-26442400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr4:26436400-26442600	Weak transcription	Brain Angular Gyrus	brain
46	chr4:26436400-26442600	Weak transcription	Brain Substantia Nigra	brain
47	chr4:26436400-26445800	Weak transcription	Brain Cingulate Gyrus	brain
48	chr4:26436400-26456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:26436600-26440600	Weak transcription	Primary T helper cells fromperipheralblood	blood
50	chr4:26436600-26442000	Weak transcription	Primary hematopoietic stem cells	blood

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