Variant report

Variant	rs3109839
Chromosome Location	chr4:26407681-26407682
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10805262	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939111	0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11722108	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11722744	0.88[CEU][hapmap];0.81[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.86[TSI][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11726853	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.87[MKK][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11727213	0.84[EUR][1000 genomes]
rs11727747	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11729843	0.82[EUR][1000 genomes]
rs11737637	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12639629	0.92[CEU][hapmap];0.90[CHB][hapmap];0.98[EUR][1000 genomes]
rs12643747	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12648802	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13104136	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13104403	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13108863	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13109703	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13111856	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13114911	0.85[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13115260	0.92[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13116044	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13116873	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13118463	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13119840	0.88[CEU][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13120216	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13125386	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13128014	0.88[CEU][hapmap];0.81[CHB][hapmap];0.86[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13128399	0.84[CEU][hapmap]
rs13129276	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13133397	0.88[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13134710	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13135156	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13139277	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13139997	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13140860	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13147671	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13152066	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867798	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2095830	0.82[EUR][1000 genomes]
rs2270226	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2725303	0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.87[MKK][hapmap];0.88[TSI][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725304	0.88[ASW][hapmap];0.88[CEU][hapmap];0.81[CHB][hapmap];0.98[CHD][hapmap];0.86[JPT][hapmap];0.82[LWK][hapmap];0.90[MKK][hapmap];0.88[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725305	0.88[ASW][hapmap];0.88[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.85[LWK][hapmap];0.93[MKK][hapmap];0.88[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2725309	0.88[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725325	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28368332	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3109843	0.91[CEU][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3109849	0.88[ASW][hapmap];0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.81[LWK][hapmap];0.94[MKK][hapmap];0.93[TSI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3113016	0.92[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.90[JPT][hapmap];0.93[TSI][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3113019	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35142730	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4289434	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.86[TSI][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4536914	0.92[CEU][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.88[TSI][hapmap];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4692531	0.89[EUR][1000 genomes]
rs4692532	0.92[CEU][hapmap];0.90[CHB][hapmap];0.90[JPT][hapmap];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56795036	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59191689	0.85[EUR][1000 genomes]
rs7349722	0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7655165	0.92[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7656190	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7693785	0.82[AMR][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
6	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
8	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
9	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
10	chr4:26385600-26408000	Weak transcription	K562	blood
11	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
12	chr4:26387000-26407800	Weak transcription	A549	lung
13	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr4:26390200-26407800	Weak transcription	Liver	Liver
15	chr4:26390400-26407800	Weak transcription	HepG2	liver
16	chr4:26390400-26407800	Weak transcription	HUVEC	blood vessel
17	chr4:26390400-26408000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr4:26390800-26407800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr4:26390800-26407800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr4:26390800-26407800	Weak transcription	HMEC	breast
21	chr4:26390800-26408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr4:26390800-26408000	Weak transcription	Thymus	Thymus
23	chr4:26391000-26408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr4:26391200-26408000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:26391200-26408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr4:26391400-26407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:26391400-26408000	Weak transcription	Colonic Mucosa	Colon
28	chr4:26391800-26407800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr4:26394000-26408000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr4:26394400-26407800	Weak transcription	Placenta	Placenta
31	chr4:26394400-26407800	Weak transcription	NHEK	skin
32	chr4:26395400-26408000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr4:26396800-26407800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr4:26397000-26408000	Weak transcription	Fetal Muscle Trunk	muscle
35	chr4:26397000-26408000	Weak transcription	NHLF	lung
36	chr4:26397400-26407800	Weak transcription	Primary T cells fromperipheralblood	blood
37	chr4:26397400-26407800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:26397400-26407800	Weak transcription	Osteobl	bone
39	chr4:26397400-26408000	Weak transcription	Fetal Intestine Large	intestine
40	chr4:26398600-26407800	Weak transcription	Adipose Nuclei	Adipose
41	chr4:26398800-26407800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:26398800-26407800	Weak transcription	Fetal Lung	lung
43	chr4:26399000-26407800	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr4:26399000-26407800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr4:26399000-26407800	Weak transcription	Fetal Thymus	thymus
46	chr4:26399000-26408000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr4:26399000-26408000	Weak transcription	Ovary	ovary
48	chr4:26399800-26437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr4:26400200-26407800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr4:26400400-26408000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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