Variant report

Variant	rs4692531
Chromosome Location	chr4:26361186-26361187
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:43)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:43 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr4:26361174-26361459	MCF-7	breast:	n/a	n/a
2	POLR2A	chr4:26361022-26361426	GM12891	blood:	n/a	n/a
3	MYC	chr4:26361156-26361387	MCF-7	breast:	n/a	n/a
4	POLR2A	chr4:26360988-26361427	GM12892	blood:	n/a	n/a
5	POLR2A	chr4:26361086-26361583	U87	brain:	n/a	n/a
6	POLR2A	chr4:26361093-26361490	ProgFib	skin:	n/a	n/a
7	POLR2A	chr4:26361034-26361586	K562	blood:	n/a	n/a
8	POLR2A	chr4:26361002-26361452	SK-N-MC	brain:	n/a	n/a
9	POLR2A	chr4:26360996-26361427	PANC-1	pancreas:	n/a	n/a
10	POLR2A	chr4:26361184-26361216	MCF-7	breast:	n/a	n/a
11	POLR2A	chr4:26361121-26361456	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr4:26361051-26361573	PFSK-1	brain:	n/a	n/a
13	POLR2A	chr4:26361063-26361513	H1-hESC	embryonic stem cell:	n/a	n/a
14	POLR2A	chr4:26361139-26361470	A549	lung:	n/a	n/a
15	PAX5	chr4:26361058-26361450	GM12878	blood:	n/a	n/a
16	POU2F2	chr4:26361100-26361329	GM12891	blood:	n/a	n/a
17	POLR2A	chr4:26360986-26361481	GM12878	blood:	n/a	n/a
18	POLR2A	chr4:26361127-26361386	HepG2	liver:	n/a	n/a
19	POLR2A	chr4:26361062-26361384	GM12878	blood:	n/a	n/a
20	POLR2A	chr4:26361079-26361485	Hela-S3	cervix:	n/a	n/a
21	POLR2A	chr4:26361036-26361535	MCF-7	breast:	n/a	n/a
22	POLR2A	chr4:26361088-26361485	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr4:26361050-26361455	GM12891	blood:	n/a	n/a
24	POLR2A	chr4:26361151-26361424	H1-hESC	embryonic stem cell:	n/a	n/a
25	POLR2A	chr4:26361045-26361407	GM12878	blood:	n/a	n/a
26	POLR2A	chr4:26361091-26361416	PANC-1	pancreas:	n/a	n/a
27	GABPA	chr4:26361183-26361396	GM12878	blood:	n/a	chr4:26361315-26361324
28	SRF	chr4:26361186-26361381	GM12878	blood:	n/a	n/a
29	POLR2A	chr4:26361165-26361424	Hela-S3	cervix:	n/a	n/a
30	POLR2A	chr4:26361104-26361386	A549	lung:	n/a	n/a
31	POLR2A	chr4:26361103-26361214	A549	lung:	n/a	n/a
32	FOSL2	chr4:26361107-26361412	HepG2	liver:	n/a	n/a
33	POLR2A	chr4:26361172-26361476	HepG2	liver:	n/a	n/a
34	TAF1	chr4:26361161-26361440	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr4:26361087-26361398	GM12878	blood:	n/a	n/a
36	POLR2A	chr4:26361072-26361377	A549	lung:	n/a	n/a
37	POLR2A	chr4:26360976-26361443	GM12892	blood:	n/a	n/a
38	POLR2A	chr4:26360963-26361492	GM12892	blood:	n/a	n/a
39	POLR2A	chr4:26361083-26361421	A549	lung:	n/a	n/a
40	POLR2A	chr4:26361078-26361472	GM12892	blood:	n/a	n/a
41	POLR2A	chr4:26360989-26361465	GM12891	blood:	n/a	n/a
42	POLR2A	chr4:26360840-26361472	H1-hESC	embryonic stem cell:	n/a	n/a
43	POLR2A	chr4:26361080-26361405	Hela-S3	cervix:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26319239..26325766-chr4:26360124..26364446,7	MCF-7	breast:

No data

Variant related genes	Relation type
RBPJ	TF binding region
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10805262	0.86[EUR][1000 genomes]
rs10939111	0.88[EUR][1000 genomes]
rs11722108	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11722744	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11726853	0.88[EUR][1000 genomes]
rs11727747	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11737637	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12639629	0.90[EUR][1000 genomes]
rs12643747	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12648802	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13104136	0.86[EUR][1000 genomes]
rs13104403	0.87[EUR][1000 genomes]
rs13108863	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13109703	0.88[EUR][1000 genomes]
rs13111856	0.89[EUR][1000 genomes]
rs13114911	0.88[EUR][1000 genomes]
rs13115260	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13116044	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13116873	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13118463	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13119840	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13120216	0.86[EUR][1000 genomes]
rs13125386	0.87[EUR][1000 genomes]
rs13128014	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13129276	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13133397	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13134710	0.86[EUR][1000 genomes]
rs13135156	0.90[EUR][1000 genomes]
rs13139277	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13139997	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13140860	0.86[EUR][1000 genomes]
rs13147671	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13152066	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16867798	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2270226	0.89[EUR][1000 genomes]
rs2725303	0.94[EUR][1000 genomes]
rs2725304	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725305	0.94[EUR][1000 genomes]
rs2725309	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725325	0.89[EUR][1000 genomes]
rs28368332	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3109839	0.89[EUR][1000 genomes]
rs3109843	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3109849	0.89[EUR][1000 genomes]
rs3113016	0.88[EUR][1000 genomes]
rs3113019	0.82[EUR][1000 genomes]
rs35142730	0.88[EUR][1000 genomes]
rs4289434	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4536914	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4692532	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56795036	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7349722	0.89[EUR][1000 genomes]
rs7655165	0.91[EUR][1000 genomes]
rs7656190	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
5	chr4:26344800-26368000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:26345200-26362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:26347800-26362600	Weak transcription	Fetal Lung	lung
8	chr4:26348000-26362600	Weak transcription	Fetal Brain Male	brain
9	chr4:26348000-26374400	Weak transcription	Fetal Stomach	stomach
10	chr4:26349400-26362000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:26351000-26361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:26351000-26362400	Weak transcription	Right Ventricle	heart
13	chr4:26351000-26374200	Weak transcription	Right Atrium	heart
14	chr4:26356400-26364800	Weak transcription	Esophagus	oesophagus
15	chr4:26358000-26361200	Weak transcription	Gastric	stomach
16	chr4:26358000-26361200	Weak transcription	Pancreas	Pancrea
17	chr4:26358000-26361200	Weak transcription	Osteobl	bone
18	chr4:26358000-26361400	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr4:26358000-26362000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr4:26358000-26362200	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:26358000-26362200	Weak transcription	Primary T cells fromperipheralblood	blood
22	chr4:26358000-26362200	Weak transcription	Left Ventricle	heart
23	chr4:26358000-26362200	Weak transcription	Psoas Muscle	Psoas
24	chr4:26358000-26362400	Weak transcription	Fetal Thymus	thymus
25	chr4:26358000-26362400	Weak transcription	Small Intestine	intestine
26	chr4:26358000-26362600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr4:26358000-26362600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr4:26358000-26362600	Weak transcription	Thymus	Thymus
29	chr4:26358000-26362600	Weak transcription	GM12878-XiMat	blood
30	chr4:26358000-26362800	Weak transcription	Colon Smooth Muscle	Colon
31	chr4:26358000-26363400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:26358000-26363400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr4:26358000-26363600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:26358000-26363800	Weak transcription	NHLF	lung
35	chr4:26358000-26368000	Weak transcription	Fetal Muscle Leg	muscle
36	chr4:26358000-26369600	Weak transcription	Adipose Nuclei	Adipose
37	chr4:26358000-26370600	Weak transcription	Sigmoid Colon	Sigmoid Colon
38	chr4:26358000-26373800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr4:26358000-26374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:26358000-26374200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr4:26358000-26374200	Weak transcription	Spleen	Spleen
42	chr4:26358000-26387600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr4:26358000-26390600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:26358200-26361800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr4:26358200-26362000	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr4:26358200-26362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr4:26358200-26362800	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr4:26358200-26363000	Weak transcription	NH-A	brain
49	chr4:26358200-26363600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr4:26358200-26370200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links