Variant report

Variant	rs13139277
Chromosome Location	chr4:26360411-26360412
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26319239..26325766-chr4:26360124..26364446,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10805262	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10939111	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11722108	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11722744	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11726853	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11727747	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11737637	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12639629	0.93[EUR][1000 genomes]
rs12643747	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12648802	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13104136	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13104403	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13108863	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13109703	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13111856	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13114911	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13115260	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13116044	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13116873	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13118463	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13119840	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13120216	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13125386	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13128014	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13129276	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13133397	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13134710	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13135156	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13139997	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13140860	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13147671	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13152066	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16867798	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2095830	0.80[AMR][1000 genomes]
rs2270226	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725303	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725304	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725305	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725309	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725325	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28368332	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3109839	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3109843	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109849	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3113016	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3113019	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35142730	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4289434	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4536914	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4692531	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4692532	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56795036	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59191689	0.85[AMR][1000 genomes]
rs7349722	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7655165	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7656190	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
5	chr4:26344800-26368000	Weak transcription	Fetal Intestine Small	intestine
6	chr4:26345200-26362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:26347800-26362600	Weak transcription	Fetal Lung	lung
8	chr4:26348000-26362600	Weak transcription	Fetal Brain Male	brain
9	chr4:26348000-26374400	Weak transcription	Fetal Stomach	stomach
10	chr4:26349400-26362000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr4:26351000-26361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr4:26351000-26362400	Weak transcription	Right Ventricle	heart
13	chr4:26351000-26374200	Weak transcription	Right Atrium	heart
14	chr4:26353400-26361000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr4:26356000-26360600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:26356400-26361000	Weak transcription	Ovary	ovary
17	chr4:26356400-26364800	Weak transcription	Esophagus	oesophagus
18	chr4:26357800-26360800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr4:26358000-26360600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:26358000-26360800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr4:26358000-26361000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:26358000-26361200	Weak transcription	Gastric	stomach
23	chr4:26358000-26361200	Weak transcription	Pancreas	Pancrea
24	chr4:26358000-26361200	Weak transcription	Osteobl	bone
25	chr4:26358000-26361400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr4:26358000-26362000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:26358000-26362200	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr4:26358000-26362200	Weak transcription	Primary T cells fromperipheralblood	blood
29	chr4:26358000-26362200	Weak transcription	Left Ventricle	heart
30	chr4:26358000-26362200	Weak transcription	Psoas Muscle	Psoas
31	chr4:26358000-26362400	Weak transcription	Fetal Thymus	thymus
32	chr4:26358000-26362400	Weak transcription	Small Intestine	intestine
33	chr4:26358000-26362600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr4:26358000-26362600	Weak transcription	Duodenum Mucosa	Duodenum
35	chr4:26358000-26362600	Weak transcription	Thymus	Thymus
36	chr4:26358000-26362600	Weak transcription	GM12878-XiMat	blood
37	chr4:26358000-26362800	Weak transcription	Colon Smooth Muscle	Colon
38	chr4:26358000-26363400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr4:26358000-26363400	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr4:26358000-26363600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:26358000-26363800	Weak transcription	NHLF	lung
42	chr4:26358000-26368000	Weak transcription	Fetal Muscle Leg	muscle
43	chr4:26358000-26369600	Weak transcription	Adipose Nuclei	Adipose
44	chr4:26358000-26370600	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr4:26358000-26373800	Weak transcription	Rectal Smooth Muscle	rectum
46	chr4:26358000-26374000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:26358000-26374200	Weak transcription	Primary B cells from peripheral blood	blood
48	chr4:26358000-26374200	Weak transcription	Spleen	Spleen
49	chr4:26358000-26387600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr4:26358000-26390600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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