Variant report

Variant	rs12648802
Chromosome Location	chr4:26397613-26397614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26290132..26292297-chr4:26397412..26399747,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10805262	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10939111	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11722108	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11722744	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11726853	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11727213	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11727747	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11729843	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11737637	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12639629	0.96[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12643747	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13104136	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13104403	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13108863	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13109703	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13111856	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13114911	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13115260	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13116044	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13116873	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13118463	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13119840	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13120216	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13125386	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13128014	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13129276	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13133397	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13134710	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13135156	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13139277	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13139997	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13140860	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13147671	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13152066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16867798	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2095830	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2270226	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725303	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2725304	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725305	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725309	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725325	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28368332	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3109839	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3109843	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3109849	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3113016	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3113019	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35142730	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4289434	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4536914	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4692531	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4692532	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56795036	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59191689	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7349722	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7655165	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7656190	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26374600-26404200	Weak transcription	Right Ventricle	heart
3	chr4:26374800-26403800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:26375000-26404000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:26375200-26406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
10	chr4:26375600-26404000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:26376800-26399800	Weak transcription	Lung	lung
12	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
14	chr4:26380000-26397800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
15	chr4:26380200-26398400	Weak transcription	Brain Anterior Caudate	brain
16	chr4:26380400-26398200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:26381000-26403800	Weak transcription	Small Intestine	intestine
18	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
19	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
20	chr4:26383000-26398400	Weak transcription	Stomach Mucosa	stomach
21	chr4:26383200-26403800	Weak transcription	Fetal Heart	heart
22	chr4:26383400-26398000	Weak transcription	Brain Substantia Nigra	brain
23	chr4:26383400-26398200	Weak transcription	Brain Angular Gyrus	brain
24	chr4:26383400-26398200	Weak transcription	Colon Smooth Muscle	Colon
25	chr4:26384600-26398200	Weak transcription	Ovary	ovary
26	chr4:26385200-26401800	Weak transcription	Fetal Brain Female	brain
27	chr4:26385600-26408000	Weak transcription	K562	blood
28	chr4:26386200-26397800	Weak transcription	Brain Hippocampus Middle	brain
29	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
30	chr4:26387000-26406400	Weak transcription	HSMMtube	muscle
31	chr4:26387000-26407800	Weak transcription	A549	lung
32	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr4:26387400-26398200	Strong transcription	HSMM	muscle
34	chr4:26387600-26398800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:26388400-26398200	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr4:26388600-26398800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr4:26388600-26403000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr4:26390200-26399800	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr4:26390200-26407800	Weak transcription	Liver	Liver
40	chr4:26390400-26399800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
41	chr4:26390400-26407800	Weak transcription	HepG2	liver
42	chr4:26390400-26407800	Weak transcription	HUVEC	blood vessel
43	chr4:26390400-26408000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr4:26390600-26402800	Weak transcription	Brain Germinal Matrix	brain
45	chr4:26390800-26404000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
46	chr4:26390800-26407800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:26390800-26407800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
48	chr4:26390800-26407800	Weak transcription	HMEC	breast
49	chr4:26390800-26408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr4:26390800-26408000	Weak transcription	Thymus	Thymus

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