Variant report

Variant	rs56795036
Chromosome Location	chr4:26348036-26348037
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26346736..26349677-chr4:26349705..26351500,2	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10805262	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10939111	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722108	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11722744	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11726853	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11727747	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11737637	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12639629	0.93[EUR][1000 genomes]
rs12643747	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12648802	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13104136	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13104403	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13108863	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13109703	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13111856	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13114911	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115260	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13116044	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13116873	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13118463	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13119840	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13120216	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13125386	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13128014	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13129276	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13133397	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13134710	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13135156	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13139277	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13139997	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13140860	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13147671	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13152066	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16867798	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1877207	0.84[AFR][1000 genomes]
rs2095830	0.82[AMR][1000 genomes]
rs2270226	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2725303	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725304	0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725305	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725309	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725325	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28368332	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3109839	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3109843	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3109849	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3113016	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3113019	0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs35142730	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4289434	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4536914	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4692531	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4692532	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59191689	0.87[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7349722	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7655165	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7656190	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:26342000-26350400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:26343000-26348800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:26343400-26356600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr4:26343600-26357200	Weak transcription	Gastric	stomach
8	chr4:26343800-26349000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:26344200-26350200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr4:26344200-26350600	Weak transcription	Pancreas	Pancrea
11	chr4:26344200-26357400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:26344200-26357800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
15	chr4:26344400-26352200	Weak transcription	Primary T cells from cord blood	blood
16	chr4:26344400-26353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr4:26344400-26357600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr4:26344800-26350600	Weak transcription	Right Ventricle	heart
19	chr4:26344800-26368000	Weak transcription	Fetal Intestine Small	intestine
20	chr4:26345000-26348200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:26345000-26357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr4:26345200-26348800	Weak transcription	Placenta Amnion	Placenta Amnion
23	chr4:26345200-26362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:26345400-26357000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr4:26345800-26349200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr4:26345800-26353000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr4:26346200-26348200	Enhancers	iPS-20b Cell Line	embryonic stem cell
28	chr4:26346400-26348200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr4:26346400-26348200	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr4:26346400-26348200	Enhancers	Brain Substantia Nigra	brain
31	chr4:26346400-26349400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
32	chr4:26346400-26351000	Enhancers	H1 Cell Line	embryonic stem cell
33	chr4:26346400-26357200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:26346600-26349400	Enhancers	HUES64 Cell Line	embryonic stem cell
35	chr4:26346800-26348200	Enhancers	HUES48 Cell Line	embryonic stem cell
36	chr4:26347000-26348200	Flanking Active TSS	Brain Anterior Caudate	brain
37	chr4:26347000-26349000	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr4:26347000-26350600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr4:26347200-26348200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr4:26347200-26348200	Flanking Active TSS	Brain Cingulate Gyrus	brain
41	chr4:26347200-26348200	Enhancers	Fetal Kidney	kidney
42	chr4:26347200-26348200	Enhancers	Fetal Muscle Leg	muscle
43	chr4:26347200-26349200	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr4:26347400-26348200	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr4:26347400-26348200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
46	chr4:26347400-26348800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr4:26347400-26349000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr4:26347600-26348200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:26347600-26348200	Active TSS	Duodenum Mucosa	Duodenum
50	chr4:26347600-26348800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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