Variant report

Variant	rs12643747
Chromosome Location	chr4:26355938-26355939
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26323589..26325890-chr4:26353677..26356458,2	K562	blood:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10805262	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10939111	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11722108	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11722744	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11726853	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11727747	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11737637	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12639629	0.92[EUR][1000 genomes]
rs12648802	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13104136	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13104403	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13108863	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13109703	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13111856	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13114911	0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13115260	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13116044	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13116873	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13118463	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13119840	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13120216	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13125386	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13128014	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13129276	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13133397	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13134710	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13135156	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13139277	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13139997	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13140860	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13147671	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13152066	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16867798	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2270226	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2725303	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725304	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725305	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2725309	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725325	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28368332	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109839	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3109843	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3109849	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3113016	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3113019	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35142730	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4289434	0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4536914	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4692531	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4692532	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56795036	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7349722	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655165	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7656190	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:26343400-26356600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:26343600-26357200	Weak transcription	Gastric	stomach
6	chr4:26344200-26357400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:26344200-26357800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
10	chr4:26344400-26357600	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:26344800-26368000	Weak transcription	Fetal Intestine Small	intestine
12	chr4:26345000-26357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:26345200-26362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:26345400-26357000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr4:26346400-26357200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:26347600-26356600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:26347600-26357600	Weak transcription	HSMM	muscle
18	chr4:26347800-26362600	Weak transcription	Fetal Lung	lung
19	chr4:26348000-26356200	Weak transcription	Primary monocytes fromperipheralblood	blood
20	chr4:26348000-26357200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr4:26348000-26357200	Weak transcription	Osteobl	bone
22	chr4:26348000-26357400	Weak transcription	NHLF	lung
23	chr4:26348000-26357600	Weak transcription	Adipose Nuclei	Adipose
24	chr4:26348000-26362600	Weak transcription	Fetal Brain Male	brain
25	chr4:26348000-26374400	Weak transcription	Fetal Stomach	stomach
26	chr4:26348200-26356200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:26348200-26357200	Weak transcription	Fetal Muscle Leg	muscle
28	chr4:26348200-26357400	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr4:26348200-26360400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr4:26349200-26356400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:26349400-26357600	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr4:26349400-26362000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr4:26349600-26356800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
34	chr4:26350800-26357200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
35	chr4:26351000-26356000	Weak transcription	Ovary	ovary
36	chr4:26351000-26357200	Weak transcription	Pancreas	Pancrea
37	chr4:26351000-26361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:26351000-26362400	Weak transcription	Right Ventricle	heart
39	chr4:26351000-26374200	Weak transcription	Right Atrium	heart
40	chr4:26351200-26356200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr4:26351400-26357200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:26351800-26356200	Weak transcription	NHDF-Ad	bronchial
43	chr4:26351800-26357200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr4:26352400-26357000	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:26352600-26357000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr4:26352600-26357400	Weak transcription	Rectal Smooth Muscle	rectum
47	chr4:26353000-26357200	Weak transcription	Primary T cells from cord blood	blood
48	chr4:26353000-26357200	Weak transcription	Fetal Heart	heart
49	chr4:26353200-26357400	Weak transcription	Small Intestine	intestine
50	chr4:26353400-26356000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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