Variant report

Variant	rs28368332
Chromosome Location	chr4:26403793-26403794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26322535..26324256-chr4:26401082..26403808,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10805262	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10939111	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722108	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11722744	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11726853	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11727213	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11727747	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11729843	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11737637	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12639629	0.99[EUR][1000 genomes]
rs12643747	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12648802	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13104136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13104403	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13108863	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13109703	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13111856	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13114911	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13115260	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13116044	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13116873	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13118463	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13119840	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13120216	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13125386	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13128014	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13129276	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13133397	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13134710	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13135156	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13139277	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13139997	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13140860	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13147671	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13152066	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16867798	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2095830	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2270226	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2725303	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2725304	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725305	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725309	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725325	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3109839	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3109843	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3109849	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3113016	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3113019	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35142730	0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4289434	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4536914	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4549366	0.81[AMR][1000 genomes]
rs4569739	0.81[AMR][1000 genomes]
rs4692531	0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4692532	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56795036	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59191689	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7349722	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7655165	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7656190	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7672424	0.81[AMR][1000 genomes]
rs7693842	0.81[AMR][1000 genomes]
rs7694133	0.81[AMR][1000 genomes]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26374600-26404200	Weak transcription	Right Ventricle	heart
3	chr4:26374800-26403800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:26375000-26404000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:26375200-26406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
10	chr4:26375600-26404000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
13	chr4:26381000-26403800	Weak transcription	Small Intestine	intestine
14	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
15	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
16	chr4:26383200-26403800	Weak transcription	Fetal Heart	heart
17	chr4:26385600-26408000	Weak transcription	K562	blood
18	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:26387000-26406400	Weak transcription	HSMMtube	muscle
20	chr4:26387000-26407800	Weak transcription	A549	lung
21	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:26390200-26407800	Weak transcription	Liver	Liver
23	chr4:26390400-26407800	Weak transcription	HepG2	liver
24	chr4:26390400-26407800	Weak transcription	HUVEC	blood vessel
25	chr4:26390400-26408000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr4:26390800-26404000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr4:26390800-26407800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr4:26390800-26407800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr4:26390800-26407800	Weak transcription	HMEC	breast
30	chr4:26390800-26408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:26390800-26408000	Weak transcription	Thymus	Thymus
32	chr4:26391000-26408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:26391200-26405200	Weak transcription	Primary T cells from cord blood	blood
34	chr4:26391200-26406000	Weak transcription	Dnd41	blood
35	chr4:26391200-26408000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:26391200-26408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
37	chr4:26391400-26403800	Weak transcription	Primary B cells from peripheral blood	blood
38	chr4:26391400-26407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr4:26391400-26408000	Weak transcription	Colonic Mucosa	Colon
40	chr4:26391600-26406200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
41	chr4:26391600-26407600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr4:26391800-26407800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr4:26392600-26407400	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr4:26393200-26407600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
45	chr4:26393600-26406200	Weak transcription	Primary B cells from cord blood	blood
46	chr4:26393600-26406400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr4:26393800-26407600	Weak transcription	NH-A	brain
48	chr4:26394000-26406200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
49	chr4:26394000-26408000	Weak transcription	Rectal Mucosa Donor 31	rectum
50	chr4:26394400-26407800	Weak transcription	Placenta	Placenta

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