Variant report

Variant	rs10939111
Chromosome Location	chr4:26425208-26425209
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10805262	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10939110	0.94[ASW][hapmap];0.82[CEU][hapmap]
rs11722108	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11722744	0.93[ASW][hapmap];0.85[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.96[LWK][hapmap];0.90[MEX][hapmap];0.81[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11726853	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.90[JPT][hapmap];0.84[MEX][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11727213	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11727747	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11729843	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11737637	0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12639629	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs12643747	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12648802	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13104136	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13104403	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13108863	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13109703	0.96[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111856	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13114911	1.00[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[LWK][hapmap];0.95[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13115260	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13116044	0.97[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13116873	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13118463	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13119840	0.85[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13120216	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125386	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13128014	0.85[CEU][hapmap];0.87[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13129276	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13133397	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13134710	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13135156	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13135696	1.00[YRI][hapmap]
rs13139277	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13139997	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13140860	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13147671	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13152066	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16867798	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1877207	0.80[ASW][hapmap];1.00[YRI][hapmap]
rs2095830	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2270225	0.82[CEU][hapmap]
rs2270226	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725303	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];0.93[TSI][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725304	0.84[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.86[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2725305	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.91[TSI][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725309	0.85[CEU][hapmap];0.87[CHB][hapmap];0.82[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725325	0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2788864	0.82[CEU][hapmap]
rs28368332	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3109839	0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];1.00[JPT][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3109843	0.87[CEU][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3109849	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.91[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3113016	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.84[MEX][hapmap];0.95[TSI][hapmap];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3113019	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35142730	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4289434	0.89[CEU][hapmap];0.95[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.80[MEX][hapmap];0.93[TSI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4536914	0.89[CEU][hapmap];0.83[CHB][hapmap];0.98[CHD][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.90[MEX][hapmap];0.82[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4549366	0.80[AMR][1000 genomes]
rs4569739	0.80[AMR][1000 genomes]
rs4692531	0.88[EUR][1000 genomes]
rs4692532	0.89[CEU][hapmap];0.91[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56795036	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs59191689	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7349722	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7655165	0.89[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7656190	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7672424	0.80[AMR][1000 genomes]
rs7693842	0.80[AMR][1000 genomes]
rs7694133	0.80[AMR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
3	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:26399800-26437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:26404400-26436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:26408000-26439000	Weak transcription	Hela-S3	cervix
7	chr4:26408400-26427000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:26408400-26428400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:26408400-26431000	Weak transcription	Fetal Kidney	kidney
10	chr4:26408400-26431400	Weak transcription	Esophagus	oesophagus
11	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
12	chr4:26408600-26425800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr4:26408600-26426800	Weak transcription	Brain Germinal Matrix	brain
14	chr4:26408600-26430800	Weak transcription	HUVEC	blood vessel
15	chr4:26408600-26430800	Weak transcription	K562	blood
16	chr4:26408800-26426600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr4:26408800-26432200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
18	chr4:26409000-26426000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr4:26409000-26431000	Weak transcription	NHEK	skin
20	chr4:26409000-26431600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr4:26409000-26431600	Weak transcription	HMEC	breast
22	chr4:26413800-26427400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:26413800-26440200	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr4:26414200-26432200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:26414600-26443000	Weak transcription	Fetal Brain Male	brain
26	chr4:26414800-26426000	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr4:26414800-26431000	Weak transcription	Stomach Smooth Muscle	stomach
28	chr4:26415000-26431000	Weak transcription	Gastric	stomach
29	chr4:26415000-26431400	Weak transcription	Lung	lung
30	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
31	chr4:26417800-26426600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:26417800-26426800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr4:26418200-26431600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr4:26418400-26426400	Weak transcription	HepG2	liver
35	chr4:26419200-26428200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr4:26419400-26431800	Weak transcription	Small Intestine	intestine
37	chr4:26420200-26440600	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr4:26421000-26432200	Weak transcription	Fetal Intestine Small	intestine
39	chr4:26421400-26425400	Enhancers	iPS-15b Cell Line	embryonic stem cell
40	chr4:26421600-26434400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr4:26422000-26426200	Genic enhancers	HUES48 Cell Line	embryonic stem cell
42	chr4:26422000-26436200	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:26422200-26428000	Strong transcription	Primary T cells from cord blood	blood
44	chr4:26422200-26428000	Strong transcription	Primary T cells fromperipheralblood	blood
45	chr4:26422200-26428400	Strong transcription	Liver	Liver
46	chr4:26422200-26428800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:26422200-26433600	Strong transcription	Primary B cells from peripheral blood	blood
48	chr4:26422200-26434800	Strong transcription	Primary B cells from cord blood	blood
49	chr4:26422200-26436600	Strong transcription	Primary T helper cells fromperipheralblood	blood
50	chr4:26422200-26437200	Strong transcription	Adipose Nuclei	Adipose

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