Variant report

Variant	rs13104136
Chromosome Location	chr4:26437849-26437850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10805262	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10939111	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11722108	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11722744	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11726853	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11727213	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11727747	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11729843	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11737637	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12639629	0.92[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs12643747	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12648802	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13104403	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13108863	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13109703	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13111856	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13114911	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13115260	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13116044	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13116873	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13118463	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13119840	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13120216	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13125386	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13128014	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13129276	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13133397	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13134710	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13135156	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13139277	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13139997	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13140860	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13147671	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13152066	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16867798	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2095830	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2270226	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2725303	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725304	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2725305	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725309	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2725325	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28368332	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3109839	0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3109843	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3109849	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3113016	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3113019	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35142730	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4289434	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4536914	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4549366	0.82[AMR][1000 genomes]
rs4569739	0.82[AMR][1000 genomes]
rs4692531	0.86[EUR][1000 genomes]
rs4692532	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56795036	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59191689	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7349722	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7655165	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7656190	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7672424	0.82[AMR][1000 genomes]
rs7693842	0.82[AMR][1000 genomes]
rs7694133	0.82[AMR][1000 genomes]

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
3	chr4:26408000-26439000	Weak transcription	Hela-S3	cervix
4	chr4:26408400-26442000	Weak transcription	Aorta	Aorta
5	chr4:26413800-26440200	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr4:26414600-26443000	Weak transcription	Fetal Brain Male	brain
7	chr4:26417200-26443600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr4:26420200-26440600	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr4:26422200-26440800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr4:26422200-26440800	Strong transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:26422800-26441200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:26423000-26442600	Weak transcription	Fetal Heart	heart
13	chr4:26423200-26446000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
15	chr4:26424400-26440800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr4:26425000-26438400	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr4:26425200-26441800	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr4:26425600-26442600	Weak transcription	Stomach Mucosa	stomach
19	chr4:26425800-26438400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
20	chr4:26425800-26440200	Strong transcription	Placenta	Placenta
21	chr4:26426200-26440600	Strong transcription	HUES48 Cell Line	embryonic stem cell
22	chr4:26427200-26440000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:26428600-26440600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr4:26428800-26442600	Weak transcription	Pancreas	Pancrea
25	chr4:26429000-26442800	Weak transcription	Psoas Muscle	Psoas
26	chr4:26431000-26440200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr4:26431800-26444400	Weak transcription	Gastric	stomach
28	chr4:26431800-26445200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr4:26432000-26440000	Weak transcription	K562	blood
30	chr4:26432400-26441600	Weak transcription	HUVEC	blood vessel
31	chr4:26432400-26443400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr4:26432600-26438200	Weak transcription	Fetal Stomach	stomach
33	chr4:26432600-26438600	Weak transcription	Fetal Intestine Small	intestine
34	chr4:26432600-26439000	Weak transcription	Lung	lung
35	chr4:26432600-26439400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
36	chr4:26432600-26439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr4:26432600-26442600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:26432600-26442600	Weak transcription	Brain Anterior Caudate	brain
39	chr4:26432600-26442800	Weak transcription	Esophagus	oesophagus
40	chr4:26432600-26442800	Weak transcription	Right Ventricle	heart
41	chr4:26432600-26444600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr4:26432600-26445600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
43	chr4:26432800-26439400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr4:26432800-26439800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:26432800-26442000	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:26433200-26440800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr4:26433600-26438400	Enhancers	Fetal Lung	lung
48	chr4:26433600-26439800	Weak transcription	Brain Germinal Matrix	brain
49	chr4:26433600-26444200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:26433800-26439600	Weak transcription	Fetal Kidney	kidney

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