Variant report

Variant	rs11727747
Chromosome Location	chr4:26378407-26378408
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10805262	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10939111	0.89[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722108	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11722744	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11726853	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11727213	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11729843	0.82[AMR][1000 genomes]
rs11737637	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12639629	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[EUR][1000 genomes]
rs12643747	0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12648802	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13104136	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13104403	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13108863	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13109703	0.93[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13111856	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13114911	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13115260	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13116044	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13116873	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13118463	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13119840	0.96[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13120216	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13125386	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13128014	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13129276	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13133397	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13134710	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13135156	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13135696	0.95[YRI][hapmap]
rs13139277	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13139997	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13140860	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13147671	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.81[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13152066	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16867798	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17639483	0.80[CEU][hapmap]
rs1877207	1.00[YRI][hapmap]
rs2095830	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2270226	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725303	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725304	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2725305	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725309	0.96[CEU][hapmap];0.82[CHB][hapmap];0.87[JPT][hapmap];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2725325	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28368332	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3109839	0.92[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109843	1.00[CEU][hapmap];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3109849	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3113016	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3113019	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35142730	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4289434	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4536914	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4692531	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4692532	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56795036	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59191689	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7349722	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7655165	1.00[CEU][hapmap];0.96[CHB][hapmap];0.96[JPT][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7656190	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26358000-26387600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:26358000-26390600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:26369200-26389000	Weak transcription	Fetal Muscle Trunk	muscle
4	chr4:26371600-26389200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr4:26371800-26378800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:26371800-26387600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr4:26373200-26388600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr4:26373800-26380400	Enhancers	Brain Cingulate Gyrus	brain
10	chr4:26374400-26388600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr4:26374600-26379000	Weak transcription	Fetal Kidney	kidney
12	chr4:26374600-26379600	Weak transcription	Gastric	stomach
13	chr4:26374600-26380800	Weak transcription	Spleen	Spleen
14	chr4:26374600-26381000	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:26374600-26387800	Weak transcription	Right Atrium	heart
16	chr4:26374600-26389200	Weak transcription	Fetal Intestine Large	intestine
17	chr4:26374600-26389200	Weak transcription	Left Ventricle	heart
18	chr4:26374600-26390000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:26374600-26390400	Weak transcription	Fetal Intestine Small	intestine
20	chr4:26374600-26390400	Weak transcription	Thymus	Thymus
21	chr4:26374600-26390600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr4:26374600-26390600	Weak transcription	Pancreas	Pancrea
23	chr4:26374600-26396800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr4:26374600-26404200	Weak transcription	Right Ventricle	heart
25	chr4:26374800-26378800	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr4:26374800-26387000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr4:26374800-26388200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:26374800-26389200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr4:26374800-26389200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:26374800-26390000	Weak transcription	HUVEC	blood vessel
31	chr4:26374800-26392600	Weak transcription	Fetal Brain Male	brain
32	chr4:26374800-26403800	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:26375000-26378800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr4:26375000-26404000	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr4:26375200-26378600	Weak transcription	GM12878-XiMat	blood
36	chr4:26375200-26378800	Weak transcription	Ovary	ovary
37	chr4:26375200-26378800	Weak transcription	NHLF	lung
38	chr4:26375200-26379400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr4:26375200-26379600	Weak transcription	Small Intestine	intestine
40	chr4:26375200-26380800	Weak transcription	Fetal Thymus	thymus
41	chr4:26375200-26381000	Weak transcription	Aorta	Aorta
42	chr4:26375200-26382200	Weak transcription	Liver	Liver
43	chr4:26375200-26387400	Weak transcription	HSMM	muscle
44	chr4:26375200-26387600	Weak transcription	NHEK	skin
45	chr4:26375200-26387800	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:26375200-26388200	Weak transcription	Adipose Nuclei	Adipose
47	chr4:26375200-26388600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr4:26375200-26388600	Weak transcription	Osteobl	bone
49	chr4:26375200-26388800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:26375200-26389200	Weak transcription	NH-A	brain

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