Variant report

Variant	rs7349722
Chromosome Location	chr4:26408315-26408316
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10805262	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10939110	0.81[GIH][hapmap]
rs10939111	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.95[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11722108	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11722744	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.89[MEX][hapmap];0.95[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11726853	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.92[MKK][hapmap];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11727213	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11727747	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11729843	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11737637	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12639629	0.96[CEU][hapmap];0.87[CHB][hapmap];0.99[EUR][1000 genomes]
rs12643747	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12648802	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13104136	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13104403	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13108863	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13109703	0.88[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13111856	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13114911	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13115260	0.96[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13116044	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13116873	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13118463	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13119840	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13120216	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13125386	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13128014	0.92[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13129276	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13133397	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13134710	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13135156	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13139277	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13139997	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13140860	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13147671	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13152066	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16867798	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2095830	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2270226	0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725303	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.84[MKK][hapmap];0.95[TSI][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2725304	0.92[CEU][hapmap];0.87[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];0.80[MKK][hapmap];0.93[TSI][hapmap];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2725305	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MKK][hapmap];0.93[TSI][hapmap];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2725309	0.92[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2725325	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2788864	0.81[GIH][hapmap]
rs28368332	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109839	0.89[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3109843	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3109849	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.89[MKK][hapmap];0.98[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113016	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3113019	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35142730	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4289434	0.96[CEU][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.95[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4536914	0.96[CEU][hapmap];0.83[CHB][hapmap];0.97[CHD][hapmap];0.95[GIH][hapmap];0.91[JPT][hapmap];0.95[MEX][hapmap];0.93[TSI][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4549366	0.81[AMR][1000 genomes]
rs4569739	0.81[AMR][1000 genomes]
rs4692531	0.89[EUR][1000 genomes]
rs4692532	0.96[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56795036	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59191689	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7655165	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7656190	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7672424	0.81[AMR][1000 genomes]
rs7693842	0.81[AMR][1000 genomes]
rs7694133	0.81[AMR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7349722	GBA3	cis	cerebellum	SCAN

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
3	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr4:26399800-26437200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:26402800-26414600	Weak transcription	Pancreas	Pancrea
6	chr4:26403000-26411600	Weak transcription	Fetal Brain Male	brain
7	chr4:26403000-26424800	Weak transcription	Fetal Brain Female	brain
8	chr4:26403200-26411600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr4:26404400-26414600	Weak transcription	Gastric	stomach
10	chr4:26404400-26436000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr4:26404600-26413800	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr4:26404600-26418000	Weak transcription	Small Intestine	intestine
13	chr4:26405000-26409400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
14	chr4:26405200-26409800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr4:26405200-26409800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr4:26405400-26408800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
17	chr4:26406000-26408400	ZNF genes & repeats	Dnd41	blood
18	chr4:26406000-26409000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
19	chr4:26406000-26409400	ZNF genes & repeats	GM12878-XiMat	blood
20	chr4:26406000-26409600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr4:26406200-26408800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr4:26406200-26408800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
23	chr4:26406200-26409000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
24	chr4:26406200-26409000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr4:26406400-26408400	ZNF genes & repeats	NHDF-Ad	bronchial
26	chr4:26406400-26408600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
27	chr4:26406400-26409000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
28	chr4:26406400-26409400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr4:26406600-26408800	ZNF genes & repeats	Primary B cells from peripheral blood	blood
30	chr4:26406600-26408800	ZNF genes & repeats	Primary T cells from cord blood	blood
31	chr4:26406800-26411800	Weak transcription	Brain Angular Gyrus	brain
32	chr4:26407000-26414600	Weak transcription	Stomach Mucosa	stomach
33	chr4:26407200-26408600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
34	chr4:26407400-26408800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr4:26407400-26408800	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
36	chr4:26407400-26409000	ZNF genes & repeats	Duodenum Mucosa	Duodenum
37	chr4:26407600-26408400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:26407600-26408400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
39	chr4:26407600-26408400	ZNF genes & repeats	NH-A	brain
40	chr4:26407600-26409000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr4:26407600-26409000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
42	chr4:26407600-26409000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:26407600-26410000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr4:26407800-26408400	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr4:26407800-26408400	ZNF genes & repeats	Adipose Nuclei	Adipose
46	chr4:26407800-26408400	ZNF genes & repeats	Liver	Liver
47	chr4:26407800-26408400	ZNF genes & repeats	HepG2	liver
48	chr4:26407800-26408400	ZNF genes & repeats	Osteobl	bone
49	chr4:26407800-26408600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
50	chr4:26407800-26408600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood

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