Variant report

Variant	rs4549366
Chromosome Location	chr4:26448292-26448293
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10805262	0.82[AMR][1000 genomes]
rs10939110	0.89[CEU][hapmap]
rs10939111	0.85[CEU][hapmap];0.80[AMR][1000 genomes]
rs11726853	0.81[CEU][hapmap]
rs11727213	0.85[EUR][1000 genomes]
rs11727747	0.82[CEU][hapmap]
rs11729843	0.83[EUR][1000 genomes]
rs11737637	0.82[AMR][1000 genomes]
rs12639629	0.82[CEU][hapmap]
rs13104136	0.82[AMR][1000 genomes]
rs13104403	0.82[AMR][1000 genomes]
rs13109703	0.89[CEU][hapmap];0.80[AMR][1000 genomes]
rs13111856	0.82[AMR][1000 genomes]
rs13114911	0.88[CEU][hapmap];0.80[AMR][1000 genomes]
rs13115260	0.84[CEU][hapmap]
rs13116206	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13118463	0.81[AMR][1000 genomes]
rs13122886	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13125386	0.82[AMR][1000 genomes]
rs13130981	0.86[EUR][1000 genomes]
rs13134710	0.82[AMR][1000 genomes]
rs13135156	0.80[AMR][1000 genomes]
rs13147671	0.82[CEU][hapmap];0.81[AMR][1000 genomes]
rs2095830	0.83[EUR][1000 genomes]
rs2095831	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2153155	0.81[CEU][hapmap]
rs2270225	0.89[CEU][hapmap]
rs2725304	0.81[CEU][hapmap]
rs2725325	0.82[CEU][hapmap]
rs2725327	0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2725328	0.91[EUR][1000 genomes]
rs2788858	0.91[EUR][1000 genomes]
rs2788860	0.86[EUR][1000 genomes]
rs2788864	0.89[CEU][hapmap]
rs28368332	0.81[AMR][1000 genomes]
rs3109828	0.86[CEU][hapmap]
rs3109841	0.82[CEU][hapmap]
rs3109849	0.81[CEU][hapmap]
rs3113016	0.81[CEU][hapmap]
rs4289434	0.81[CEU][hapmap]
rs4536914	0.81[CEU][hapmap]
rs4569739	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692532	0.82[CEU][hapmap]
rs59191689	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6811910	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6818128	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6853254	0.82[CEU][hapmap]
rs7349722	0.81[AMR][1000 genomes]
rs7655165	0.82[CEU][hapmap]
rs7672424	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693785	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7693842	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7694133	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7694790	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv10467	chr4:26442264-26454782	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
2	esv3464934	chr4:26442625-26454253	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	esv3464936	chr4:26442630-26454272	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	esv3464935	chr4:26442653-26454262	ZNF genes & repeats Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv3464937	chr4:26442766-26454169	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv515501	chr4:26446006-26457168	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26423400-26459200	Weak transcription	Thymus	Thymus
2	chr4:26436400-26456400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr4:26440800-26454800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:26443000-26450600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:26443400-26453200	Weak transcription	Osteobl	bone
6	chr4:26443600-26454200	Weak transcription	Fetal Lung	lung
7	chr4:26444200-26453600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr4:26445000-26461000	Weak transcription	HSMM	muscle
9	chr4:26446600-26456000	Weak transcription	HSMMtube	muscle

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