Variant report

Variant	rs3109828
Chromosome Location	chr4:26394525-26394526
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26390209..26392373-chr4:26393968..26395750,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10939110	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13109703	0.83[CEU][hapmap]
rs13114911	0.82[CEU][hapmap]
rs2153155	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2270225	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2725308	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2788864	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3109836	0.81[JPT][hapmap];1.00[YRI][hapmap]
rs3109841	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3109844	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4618302	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6853254	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6853954	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26374600-26396800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr4:26374600-26404200	Weak transcription	Right Ventricle	heart
4	chr4:26374800-26403800	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr4:26375000-26404000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr4:26375200-26406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
11	chr4:26375600-26404000	Weak transcription	Duodenum Mucosa	Duodenum
12	chr4:26376800-26399800	Weak transcription	Lung	lung
13	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
15	chr4:26380000-26397800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr4:26380200-26396600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr4:26380200-26398400	Weak transcription	Brain Anterior Caudate	brain
18	chr4:26380400-26398200	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:26381000-26403800	Weak transcription	Small Intestine	intestine
20	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
21	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
22	chr4:26383000-26398400	Weak transcription	Stomach Mucosa	stomach
23	chr4:26383200-26403800	Weak transcription	Fetal Heart	heart
24	chr4:26383400-26398000	Weak transcription	Brain Substantia Nigra	brain
25	chr4:26383400-26398200	Weak transcription	Brain Angular Gyrus	brain
26	chr4:26383400-26398200	Weak transcription	Colon Smooth Muscle	Colon
27	chr4:26384600-26398200	Weak transcription	Ovary	ovary
28	chr4:26385200-26401800	Weak transcription	Fetal Brain Female	brain
29	chr4:26385600-26408000	Weak transcription	K562	blood
30	chr4:26386200-26397800	Weak transcription	Brain Hippocampus Middle	brain
31	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr4:26387000-26406400	Weak transcription	HSMMtube	muscle
33	chr4:26387000-26407800	Weak transcription	A549	lung
34	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr4:26387400-26398200	Strong transcription	HSMM	muscle
36	chr4:26387600-26396800	Strong transcription	HUES6 Cell Line	embryonic stem cell
37	chr4:26387600-26398800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr4:26387800-26395000	Strong transcription	NHDF-Ad	bronchial
39	chr4:26388400-26397200	Strong transcription	Primary monocytes fromperipheralblood	blood
40	chr4:26388400-26398200	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr4:26388600-26397400	Strong transcription	Osteobl	bone
42	chr4:26388600-26398800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr4:26388600-26403000	Strong transcription	Monocytes-CD14+_RO01746	blood
44	chr4:26389000-26397000	Strong transcription	Fetal Muscle Trunk	muscle
45	chr4:26389000-26397600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr4:26389200-26395600	Strong transcription	Fetal Intestine Large	intestine
47	chr4:26390000-26394600	Weak transcription	Hela-S3	cervix
48	chr4:26390200-26396800	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr4:26390200-26399800	Weak transcription	Sigmoid Colon	Sigmoid Colon
50	chr4:26390200-26407800	Weak transcription	Liver	Liver

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