Variant report

Variant	rs3109841
Chromosome Location	chr4:26401987-26401988
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26331631..26332247-chr4:26401699..26402211,2	MCF-7	breast:
2	chr4:26322535..26324256-chr4:26401082..26403808,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10939110	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2153155	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2270225	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2725308	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2788864	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3109828	0.96[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3109836	1.00[YRI][hapmap]
rs3109844	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4618302	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6853254	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6853954	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26374600-26404200	Weak transcription	Right Ventricle	heart
3	chr4:26374800-26403800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr4:26375000-26404000	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr4:26375200-26406200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr4:26375200-26439200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:26375400-26407800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:26375400-26408000	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr4:26375400-26408000	Weak transcription	Fetal Stomach	stomach
10	chr4:26375600-26404000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr4:26379400-26407800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr4:26379600-26408200	Weak transcription	Fetal Kidney	kidney
13	chr4:26381000-26403800	Weak transcription	Small Intestine	intestine
14	chr4:26381200-26408000	Weak transcription	Aorta	Aorta
15	chr4:26381600-26439800	Weak transcription	Spleen	Spleen
16	chr4:26383200-26403800	Weak transcription	Fetal Heart	heart
17	chr4:26385600-26408000	Weak transcription	K562	blood
18	chr4:26386400-26407800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr4:26387000-26406400	Weak transcription	HSMMtube	muscle
20	chr4:26387000-26407800	Weak transcription	A549	lung
21	chr4:26387200-26436000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr4:26388600-26403000	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr4:26390200-26407800	Weak transcription	Liver	Liver
24	chr4:26390400-26407800	Weak transcription	HepG2	liver
25	chr4:26390400-26407800	Weak transcription	HUVEC	blood vessel
26	chr4:26390400-26408000	Weak transcription	Stomach Smooth Muscle	stomach
27	chr4:26390600-26402800	Weak transcription	Brain Germinal Matrix	brain
28	chr4:26390800-26404000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr4:26390800-26407800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr4:26390800-26407800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:26390800-26407800	Weak transcription	HMEC	breast
32	chr4:26390800-26408000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr4:26390800-26408000	Weak transcription	Thymus	Thymus
34	chr4:26391000-26408000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr4:26391200-26405200	Weak transcription	Primary T cells from cord blood	blood
36	chr4:26391200-26406000	Weak transcription	Dnd41	blood
37	chr4:26391200-26408000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr4:26391200-26408000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr4:26391400-26403800	Weak transcription	Primary B cells from peripheral blood	blood
40	chr4:26391400-26407800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr4:26391400-26408000	Weak transcription	Colonic Mucosa	Colon
42	chr4:26391600-26406200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr4:26391600-26407600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr4:26391800-26407800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr4:26392400-26402400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr4:26392600-26407400	Weak transcription	Primary T helper cells fromperipheralblood	blood
47	chr4:26393200-26407600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:26393600-26406200	Weak transcription	Primary B cells from cord blood	blood
49	chr4:26393600-26406400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr4:26393800-26403200	Weak transcription	GM12878-XiMat	blood

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