Variant report

Variant rs3109836
Chromosome Location chr4:26408827-26408828
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:122 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr4:26375200-26439200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
2 chr4:26381600-26439800 Weak transcription Spleen Spleen
3 chr4:26387200-26436000 Weak transcription Placenta Amnion Placenta Amnion
4 chr4:26399800-26437200 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
5 chr4:26402800-26414600 Weak transcription Pancreas Pancrea
6 chr4:26403000-26411600 Weak transcription Fetal Brain Male brain
7 chr4:26403000-26424800 Weak transcription Fetal Brain Female brain
8 chr4:26403200-26411600 Weak transcription Brain Cingulate Gyrus brain
9 chr4:26404400-26414600 Weak transcription Gastric stomach
10 chr4:26404400-26436000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
11 chr4:26404600-26413800 Weak transcription Skeletal Muscle Male skeletal muscle
12 chr4:26404600-26418000 Weak transcription Small Intestine intestine
13 chr4:26405000-26409400 ZNF genes & repeats HUES6 Cell Line embryonic stem cell
14 chr4:26405200-26409800 ZNF genes & repeats H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr4:26405200-26409800 Strong transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
16 chr4:26406000-26409000 ZNF genes & repeats iPS-20b Cell Line embryonic stem cell
17 chr4:26406000-26409400 ZNF genes & repeats GM12878-XiMat blood
18 chr4:26406000-26409600 ZNF genes & repeats hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
19 chr4:26406200-26409000 ZNF genes & repeats HUES48 Cell Line embryonic stem cell
20 chr4:26406200-26409000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
21 chr4:26406400-26409000 ZNF genes & repeats iPS-18 Cell Line embryonic stem cell
22 chr4:26406400-26409400 ZNF genes & repeats hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
23 chr4:26406800-26411800 Weak transcription Brain Angular Gyrus brain
24 chr4:26407000-26414600 Weak transcription Stomach Mucosa stomach
25 chr4:26407400-26409000 ZNF genes & repeats Duodenum Mucosa Duodenum
26 chr4:26407600-26409000 ZNF genes & repeats Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
27 chr4:26407600-26409000 ZNF genes & repeats Breast Myoepithelial Primary Cells Breast
28 chr4:26407600-26409000 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Female --
29 chr4:26407600-26410000 Strong transcription Primary T helper 17 cells PMA-I stimulated --
30 chr4:26407800-26409000 ZNF genes & repeats Primary B cells from cord blood blood
31 chr4:26407800-26409000 ZNF genes & repeats Primary hematopoietic stem cells short term culture blood
32 chr4:26407800-26409000 ZNF genes & repeats Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
33 chr4:26407800-26409000 Strong transcription Placenta Placenta
34 chr4:26407800-26409000 ZNF genes & repeats HMEC breast
35 chr4:26407800-26409000 ZNF genes & repeats NHEK skin
36 chr4:26407800-26409400 ZNF genes & repeats ES-I3 Cell Line embryonic stem cell
37 chr4:26407800-26409400 Strong transcription Brain Hippocampus Middle brain
38 chr4:26407800-26409400 Strong transcription Skeletal Muscle Female skeletal muscle
39 chr4:26407800-26410200 Strong transcription Fetal Thymus thymus
40 chr4:26407800-26412000 Strong transcription HSMM muscle
41 chr4:26408000-26409000 ZNF genes & repeats IMR90 fetal lung fibroblasts Cell Line lung
42 chr4:26408000-26409200 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
43 chr4:26408000-26439000 Weak transcription Hela-S3 cervix
44 chr4:26408200-26410600 Enhancers Primary neutrophils fromperipheralblood blood
45 chr4:26408200-26411600 Weak transcription Colon Smooth Muscle Colon
46 chr4:26408400-26409000 Strong transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr4:26408400-26409000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
48 chr4:26408400-26409000 Strong transcription Fetal Intestine Large intestine
49 chr4:26408400-26409200 Strong transcription NH-A brain
50 chr4:26408400-26409400 Strong transcription Primary hematopoietic stem cells blood

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