Variant report

Variant	rs6853254
Chromosome Location	chr4:26352363-26352364
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26344289..26346565-chr4:26352107..26354258,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10939110	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2153155	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2270225	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2725308	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2788864	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3109828	0.96[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3109836	0.86[JPT][hapmap];1.00[YRI][hapmap]
rs3109841	0.92[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109844	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4618302	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6853954	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:26343400-26356600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr4:26343600-26357200	Weak transcription	Gastric	stomach
6	chr4:26344200-26357400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr4:26344200-26357800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
10	chr4:26344400-26353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr4:26344400-26357600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr4:26344800-26368000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:26345000-26357200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr4:26345200-26362600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:26345400-26357000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr4:26345800-26353000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr4:26346400-26357200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr4:26347600-26356600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr4:26347600-26357600	Weak transcription	HSMM	muscle
20	chr4:26347800-26353200	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr4:26347800-26362600	Weak transcription	Fetal Lung	lung
22	chr4:26348000-26355200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:26348000-26356200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr4:26348000-26357200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr4:26348000-26357200	Weak transcription	Osteobl	bone
26	chr4:26348000-26357400	Weak transcription	NHLF	lung
27	chr4:26348000-26357600	Weak transcription	Adipose Nuclei	Adipose
28	chr4:26348000-26362600	Weak transcription	Fetal Brain Male	brain
29	chr4:26348000-26374400	Weak transcription	Fetal Stomach	stomach
30	chr4:26348200-26353400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:26348200-26354000	Weak transcription	Left Ventricle	heart
32	chr4:26348200-26356200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr4:26348200-26357200	Weak transcription	Fetal Muscle Leg	muscle
34	chr4:26348200-26357400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:26348200-26360400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr4:26348600-26354600	Enhancers	Brain Substantia Nigra	brain
37	chr4:26348800-26355000	Enhancers	Brain Cingulate Gyrus	brain
38	chr4:26349000-26353600	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:26349000-26354200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr4:26349200-26352400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
41	chr4:26349200-26356400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr4:26349400-26352400	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr4:26349400-26354400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:26349400-26357600	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr4:26349400-26362000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr4:26349600-26352400	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr4:26349600-26356800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr4:26350000-26353400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:26350400-26354800	Enhancers	Brain Hippocampus Middle	brain
50	chr4:26350600-26353600	Enhancers	Brain Angular Gyrus	brain

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