Variant report

Variant	rs6853954
Chromosome Location	chr4:26345465-26345466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10939110	0.86[EUR][1000 genomes]
rs2153155	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2270225	0.87[EUR][1000 genomes]
rs2725308	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2788864	0.85[EUR][1000 genomes]
rs3109828	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3109841	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3109844	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4618302	0.86[EUR][1000 genomes]
rs6853254	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26323800-26374400	Weak transcription	Lung	lung
2	chr4:26325000-26374200	Weak transcription	Fetal Intestine Large	intestine
3	chr4:26333400-26356200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr4:26333600-26347200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr4:26342000-26350400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr4:26342400-26345800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr4:26342400-26347600	Enhancers	HSMM	muscle
8	chr4:26342600-26345800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr4:26342800-26345800	Enhancers	Psoas Muscle	Psoas
10	chr4:26343000-26345800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr4:26343000-26346400	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr4:26343000-26348800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:26343200-26345600	Enhancers	Osteobl	bone
14	chr4:26343200-26347000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr4:26343200-26347400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr4:26343400-26345800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr4:26343400-26356600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr4:26343600-26357200	Weak transcription	Gastric	stomach
19	chr4:26343800-26346400	Weak transcription	Fetal Brain Female	brain
20	chr4:26343800-26347800	Weak transcription	Left Ventricle	heart
21	chr4:26343800-26349000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr4:26344000-26346400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:26344000-26346600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr4:26344000-26347200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:26344200-26345600	Enhancers	HMEC	breast
26	chr4:26344200-26346200	Weak transcription	Fetal Stomach	stomach
27	chr4:26344200-26346800	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr4:26344200-26347000	Weak transcription	Stomach Mucosa	stomach
29	chr4:26344200-26347200	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr4:26344200-26347200	Weak transcription	Fetal Muscle Leg	muscle
31	chr4:26344200-26347200	Weak transcription	Right Atrium	heart
32	chr4:26344200-26348000	Weak transcription	Ovary	ovary
33	chr4:26344200-26350200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr4:26344200-26350600	Weak transcription	Pancreas	Pancrea
35	chr4:26344200-26357400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr4:26344200-26357800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr4:26344200-26370800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:26344200-26374200	Weak transcription	Placenta	Placenta
39	chr4:26344400-26346200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr4:26344400-26346400	Weak transcription	GM12878-XiMat	blood
41	chr4:26344400-26346600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:26344400-26347000	Weak transcription	Primary T helper cells fromperipheralblood	blood
43	chr4:26344400-26352200	Weak transcription	Primary T cells from cord blood	blood
44	chr4:26344400-26353200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
45	chr4:26344400-26357600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr4:26344600-26345600	Active TSS	Brain Angular Gyrus	brain
47	chr4:26344600-26345800	Active TSS	Brain Substantia Nigra	brain
48	chr4:26344600-26346400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr4:26344600-26347200	Weak transcription	Stomach Smooth Muscle	stomach
50	chr4:26344800-26346200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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