Variant report

Variant	rs13119840
Chromosome Location	chr4:26375354-26375355
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:26373741..26376341-chr4:26381359..26383969,2	K562	blood:
2	chr4:26374599..26376344-chr4:26379092..26381336,3	K562	blood:
3	chr4:26370806..26373086-chr4:26374915..26376898,2	K562	blood:
4	chr4:26321136..26324041-chr4:26372058..26375413,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168214	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10805262	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10939111	0.85[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11722108	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11722744	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11726853	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11727213	0.82[AMR][1000 genomes]
rs11727747	0.96[CEU][hapmap];0.87[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11729843	0.81[AMR][1000 genomes]
rs11737637	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12639629	0.96[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs12643747	0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12648802	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13104136	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13104403	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13108863	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13109703	0.89[CEU][hapmap];0.83[CHB][hapmap];0.96[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13111856	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13114911	0.89[CEU][hapmap];0.83[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13115260	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13116044	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13116873	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13118463	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13120216	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13125386	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13128014	1.00[CEU][hapmap];0.95[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13129276	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13133397	1.00[CEU][hapmap];0.81[CHB][hapmap];0.96[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13134710	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13135156	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13135696	0.95[YRI][hapmap]
rs13139277	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13139997	0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13140860	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13147671	0.96[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13152066	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16867798	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1877207	1.00[YRI][hapmap]
rs2095830	0.82[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs2270226	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2725303	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2725304	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725305	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2725309	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2725325	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28368332	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109839	0.88[CEU][hapmap];0.91[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3109843	0.96[CEU][hapmap];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3109849	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3113016	0.96[CEU][hapmap];0.82[CHB][hapmap];0.91[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3113019	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35142730	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4289434	0.96[CEU][hapmap];0.87[CHB][hapmap];0.91[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4536914	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692531	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4692532	0.96[CEU][hapmap];0.83[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56795036	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs59191689	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7349722	0.92[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7655165	0.96[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7656190	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26358000-26387600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:26358000-26390600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr4:26361400-26376600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:26369200-26389000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr4:26370400-26375400	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:26371600-26389200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr4:26371600-26408200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr4:26371800-26378800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr4:26371800-26387600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:26373200-26375400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr4:26373200-26375400	Enhancers	Stomach Mucosa	stomach
12	chr4:26373200-26375600	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr4:26373200-26375600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr4:26373200-26388600	Enhancers	Primary neutrophils fromperipheralblood	blood
15	chr4:26373400-26375400	Enhancers	Brain Hippocampus Middle	brain
16	chr4:26373400-26375600	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr4:26373400-26376600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
18	chr4:26373600-26375400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr4:26373600-26375600	Enhancers	Brain Anterior Caudate	brain
20	chr4:26373600-26375600	Enhancers	Brain Substantia Nigra	brain
21	chr4:26373600-26376000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr4:26373800-26375400	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr4:26373800-26375400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:26373800-26375400	Enhancers	Colon Smooth Muscle	Colon
25	chr4:26373800-26375400	Enhancers	Rectal Smooth Muscle	rectum
26	chr4:26373800-26375400	Enhancers	Dnd41	blood
27	chr4:26373800-26375600	Enhancers	Duodenum Mucosa	Duodenum
28	chr4:26373800-26376000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
29	chr4:26373800-26376200	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr4:26373800-26376600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr4:26373800-26380400	Enhancers	Brain Cingulate Gyrus	brain
32	chr4:26374000-26375400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr4:26374000-26375400	Enhancers	Muscle Satellite Cultured Cells	--
34	chr4:26374000-26375600	Enhancers	Primary hematopoietic stem cells	blood
35	chr4:26374000-26375600	Enhancers	Primary T helper cells fromperipheralblood	blood
36	chr4:26374000-26375600	Enhancers	Brain Germinal Matrix	brain
37	chr4:26374000-26375800	Enhancers	Primary T cells from cord blood	blood
38	chr4:26374000-26375800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr4:26374000-26376400	Enhancers	Primary T helper cells PMA-I stimulated	--
40	chr4:26374200-26375400	Enhancers	Primary B cells from cord blood	blood
41	chr4:26374200-26375400	Enhancers	Primary B cells from peripheral blood	blood
42	chr4:26374200-26375400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr4:26374200-26375400	Enhancers	Brain Angular Gyrus	brain
44	chr4:26374200-26375400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
45	chr4:26374200-26375400	Enhancers	HMEC	breast
46	chr4:26374200-26375400	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr4:26374200-26375600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
48	chr4:26374200-26375800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr4:26374200-26375800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr4:26374200-26376000	Enhancers	Primary T helper naive cells from peripheral blood	blood

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