Variant report

Variant	rs56035229
Chromosome Location	chr4:26318313-26318314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10939104	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1112771	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11726888	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11728265	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13114817	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13138863	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1397730	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1877207	0.81[AFR][1000 genomes]
rs4692523	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	esv3414979	chr4:26317104-26319302	Weak transcription Enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3354237	chr4:26317604-26318952	Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26309600-26320600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:26316600-26320400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:26317400-26319600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:26318000-26319000	Weak transcription	NHLF	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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