Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10461084	0.86[ASN][1000 genomes]
rs1112771	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11726888	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11728265	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12639856	0.86[ASN][1000 genomes]
rs13109468	0.82[ASN][1000 genomes]
rs13109842	0.92[CEU][hapmap];0.83[JPT][hapmap];0.95[MKK][hapmap]
rs13114817	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13123863	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13128399	0.92[CEU][hapmap];0.88[JPT][hapmap]
rs13135696	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs13138863	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13142370	0.90[ASN][1000 genomes]
rs1397730	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17639483	0.81[CEU][hapmap];0.83[JPT][hapmap]
rs1877207	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs2063444	0.86[ASN][1000 genomes]
rs3762930	0.92[CEU][hapmap];0.83[JPT][hapmap]
rs4692523	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56035229	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9996988	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10939104	RBPJ	cis	lymphoblastoid	seeQTL

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26309600-26320600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:26311800-26315000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr4:26313400-26314800	Enhancers	Primary B cells from peripheral blood	blood
5	chr4:26313400-26314800	Enhancers	Primary T cells fromperipheralblood	blood
6	chr4:26313400-26314800	Enhancers	GM12878-XiMat	blood
7	chr4:26313600-26314600	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr4:26314000-26314800	Enhancers	Primary B cells from cord blood	blood
9	chr4:26314000-26314800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr4:26314200-26314800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:26314200-26314800	Enhancers	Primary T helper naive cells from peripheral blood	blood
12	chr4:26314400-26316000	Weak transcription	H1 Cell Line	embryonic stem cell

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