Variant report

Variant	rs13109468
Chromosome Location	chr4:26280575-26280576
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10461084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10939104	0.82[ASN][1000 genomes]
rs1112771	0.82[ASN][1000 genomes]
rs11728265	0.84[ASN][1000 genomes]
rs12639856	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13114817	0.83[ASN][1000 genomes]
rs13138863	0.81[ASN][1000 genomes]
rs13142370	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1397730	0.85[ASN][1000 genomes]
rs2063444	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2309359	0.84[AFR][1000 genomes]
rs28590023	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4692114	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs56251266	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62409733	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7655052	0.80[CHB][hapmap]
rs9996988	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
2	chr4:26275200-26281800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:26275400-26283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:26275600-26283600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:26275600-26289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:26280000-26280600	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr4:26280000-26280800	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr4:26280200-26281400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr4:26280400-26281000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:26280400-26281000	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr4:26280400-26281000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr4:26280400-26289400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links