Variant report

Variant	rs62409733
Chromosome Location	chr4:26277506-26277507
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10461084	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12639856	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13109468	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2063444	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28590023	0.81[AMR][1000 genomes]
rs56251266	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9996988	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
2	chr4:26274200-26277600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
3	chr4:26275200-26279200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr4:26275200-26280000	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr4:26275200-26281800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr4:26275400-26283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:26275600-26283600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr4:26275600-26289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr4:26275800-26278800	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr4:26276000-26278800	Weak transcription	Fetal Brain Male	brain
11	chr4:26277000-26280000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr4:26277000-26280400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr4:26277400-26278800	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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