Variant report

Variant	rs9996988
Chromosome Location	chr4:26281513-26281514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10461084	0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10939104	0.85[ASN][1000 genomes]
rs1112771	0.84[ASN][1000 genomes]
rs11728265	0.87[ASN][1000 genomes]
rs12639856	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13109468	0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13114817	0.86[ASN][1000 genomes]
rs13123863	0.81[ASN][1000 genomes]
rs13133257	0.82[AMR][1000 genomes]
rs13138863	0.84[ASN][1000 genomes]
rs13142370	0.95[ASN][1000 genomes]
rs1397730	0.88[ASN][1000 genomes]
rs2063444	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56251266	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62409733	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
2	chr4:26275200-26281800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr4:26275400-26283400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:26275600-26283600	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr4:26275600-26289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr4:26280400-26289400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr4:26280600-26283200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr4:26280600-26283200	Weak transcription	NHLF	lung
9	chr4:26280800-26283600	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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