Variant report

Variant	rs1397730
Chromosome Location	chr4:26302555-26302556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26301899..26303918-chr4:26305845..26308033,2	K562	blood:
2	chr4:26297878..26299553-chr4:26301719..26304155,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10461084	0.88[ASN][1000 genomes]
rs10939104	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1112771	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11726888	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11728265	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639856	0.88[ASN][1000 genomes]
rs13109468	0.85[ASN][1000 genomes]
rs13109842	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs13114817	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13123863	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13128399	0.88[CEU][hapmap]
rs13135696	0.89[CEU][hapmap]
rs13138863	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13142370	0.93[ASN][1000 genomes]
rs1877207	0.89[CEU][hapmap];0.83[JPT][hapmap]
rs2063444	0.88[ASN][1000 genomes]
rs3762930	0.89[CEU][hapmap]
rs56035229	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7655052	0.80[CHB][hapmap]
rs9996988	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26297400-26304400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr4:26297600-26302800	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr4:26298800-26302800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr4:26300400-26303000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr4:26300400-26304000	Weak transcription	Adipose Nuclei	Adipose
6	chr4:26300600-26302600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr4:26300600-26302800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:26300600-26302800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr4:26300600-26304600	Weak transcription	HSMMtube	muscle
10	chr4:26301400-26303000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:26301400-26304600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr4:26301600-26302800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:26301600-26302800	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:26301600-26303200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr4:26301600-26305200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:26301800-26302600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr4:26301800-26302800	Enhancers	Fetal Lung	lung
19	chr4:26301800-26304000	Weak transcription	GM12878-XiMat	blood
20	chr4:26302000-26302800	Enhancers	NHDF-Ad	bronchial
21	chr4:26302200-26302600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr4:26302200-26303000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr4:26302200-26303000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:26302200-26303000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:26302400-26302600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr4:26302400-26302800	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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