Variant report

Variant	rs11726888
Chromosome Location	chr4:26319609-26319610
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10939104	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1112771	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11728265	0.92[AFR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13114817	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13123863	0.88[AFR][1000 genomes]
rs13138863	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1397730	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4692523	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56035229	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26301600-26320600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr4:26309600-26320600	Weak transcription	Colon Smooth Muscle	Colon
3	chr4:26316600-26320400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr4:26319000-26319800	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr4:26319200-26320200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr4:26319400-26319800	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
7	chr4:26319400-26320000	ZNF genes & repeats	GM12878-XiMat	blood
8	chr4:26319400-26320200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr4:26319600-26319800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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