Variant report

Variant	rs4692114
Chromosome Location	chr4:26284472-26284473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10027315	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10461084	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13109468	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs13133257	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2271384	0.90[ASN][1000 genomes]
rs28590023	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692453	0.89[ASN][1000 genomes]
rs7679241	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7689800	0.94[ASN][1000 genomes]
rs7693030	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv519405	chr4:26284472-26292555	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv593852	chr4:26284472-26292636	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1793856	chr4:26284472-26294886	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1794278	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1798961	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4692114	PI4K2B	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
2	chr4:26275600-26289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:26280400-26289400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:26282000-26290800	Weak transcription	Placenta	Placenta
5	chr4:26283400-26284600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:26284000-26285600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr4:26284000-26285600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:26284000-26290000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:26284200-26289600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr4:26284200-26290000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr4:26284200-26290000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr4:26284400-26285400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:26284400-26289600	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr4:26284400-26290000	Weak transcription	NHLF	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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