Variant report

Variant	rs7679241
Chromosome Location	chr4:26288550-26288551
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10027315	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12639856	0.81[EUR][1000 genomes]
rs13133257	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2063444	0.81[EUR][1000 genomes]
rs2271384	0.91[ASN][1000 genomes]
rs28590023	0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692114	0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4692453	0.90[ASN][1000 genomes]
rs7689800	0.95[ASN][1000 genomes]
rs7693030	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829889	chr4:26169954-26338313	Active TSS Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv519405	chr4:26284472-26292555	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv593852	chr4:26284472-26292636	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv1793856	chr4:26284472-26294886	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv1794278	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv1798961	chr4:26284472-26294886	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv593853	chr4:26286920-26295174	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26266400-26289000	Weak transcription	Right Atrium	heart
2	chr4:26275600-26289600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:26280400-26289400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr4:26282000-26290800	Weak transcription	Placenta	Placenta
5	chr4:26284000-26290000	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr4:26284200-26289600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr4:26284200-26290000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:26284200-26290000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr4:26284400-26289600	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr4:26284400-26290000	Weak transcription	NHLF	lung
11	chr4:26284600-26289800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr4:26286400-26289000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr4:26286400-26290000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:26288200-26289800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:26288400-26289400	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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