Variant report

Variant	rs376306027
Chromosome Location	chr6:29718802-29718803
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:29718134..29720156-chr6:31462731..31465532,2	MCF-7	breast:
2	chr6:29595494..29598412-chr6:29717928..29720060,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HLA-F-2	chr6:29718330-29718868	NONHSAT108546

Variant related genes	Relation type
ENSG00000204681	Chromatin interaction
ENSG00000201680	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv20940	chr6:29653954-29923410	Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
2	nsv428475	chr6:29659525-29763392	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv428139	chr6:29659525-29892317	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
4	nsv427749	chr6:29659525-29975144	Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
5	nsv508397	chr6:29663132-29761448	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
6	esv1821077	chr6:29670915-29726207	Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
7	esv1794141	chr6:29670915-29765814	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
8	nsv10809	chr6:29692573-29794119	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
9	nsv883532	chr6:29703262-29814963	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
10	nsv883534	chr6:29708222-29724310	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
11	esv3441842	chr6:29715749-29942950	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
12	nsv969373	chr6:29717694-29719688	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:29717000-29720000	Enhancers	Spleen	Spleen
2	chr6:29717200-29719600	Weak transcription	HSMM	muscle
3	chr6:29717400-29719400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:29717400-29719400	Weak transcription	Lung	lung
5	chr6:29717400-29719600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:29717400-29719600	Weak transcription	A549	lung
7	chr6:29717400-29719600	Weak transcription	HUVEC	blood vessel
8	chr6:29717400-29719800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr6:29717400-29719800	Enhancers	Left Ventricle	heart
10	chr6:29717400-29719800	Weak transcription	HSMMtube	muscle
11	chr6:29717400-29719800	Weak transcription	Osteobl	bone
12	chr6:29717400-29720000	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr6:29717400-29720000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr6:29717600-29719400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr6:29717600-29719400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr6:29717600-29719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:29717600-29719400	Weak transcription	NHLF	lung
18	chr6:29717600-29719600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr6:29717600-29719600	Weak transcription	Hela-S3	cervix
20	chr6:29717600-29719800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:29717600-29719800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:29717600-29719800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr6:29717600-29719800	Weak transcription	Brain Anterior Caudate	brain
24	chr6:29717600-29719800	Weak transcription	Colonic Mucosa	Colon
25	chr6:29717600-29719800	Weak transcription	Psoas Muscle	Psoas
26	chr6:29717600-29719800	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr6:29717600-29719800	Enhancers	Right Ventricle	heart
28	chr6:29717600-29719800	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr6:29717600-29719800	Weak transcription	Stomach Mucosa	stomach
30	chr6:29717600-29719800	Weak transcription	NHEK	skin
31	chr6:29717600-29720000	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:29717600-29720200	Weak transcription	Gastric	stomach
33	chr6:29717800-29719000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
34	chr6:29717800-29719400	Weak transcription	Primary B cells from peripheral blood	blood
35	chr6:29717800-29719400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
36	chr6:29717800-29719400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr6:29717800-29719400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:29717800-29719400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr6:29717800-29719400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr6:29717800-29719400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr6:29717800-29719400	Weak transcription	HMEC	breast
42	chr6:29717800-29719400	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr6:29717800-29719400	Weak transcription	NHDF-Ad	bronchial
44	chr6:29717800-29719600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
45	chr6:29717800-29719600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr6:29717800-29719600	Weak transcription	K562	blood
47	chr6:29717800-29719800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr6:29717800-29719800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr6:29717800-29719800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
50	chr6:29717800-29719800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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