Variant report

Variant	rs3763295
Chromosome Location	chr6:31587938-31587939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	STAT5A	chr6:31587698-31589267	GM12878	blood:	n/a	n/a
2	EBF1	chr6:31587837-31588391	GM12878	blood:	n/a	n/a
3	GTF2F1	chr6:31587759-31588412	Hela-S3	cervix:	n/a	n/a
4	POLR2A	chr6:31587688-31589038	GM18951	blood:	n/a	n/a
5	CREB1	chr6:31587646-31588390	A549	lung:	n/a	n/a
6	POLR2A	chr6:31587425-31589192	K562	blood:	n/a	n/a
7	BACH1	chr6:31587760-31588128	H1-hESC	embryonic stem cell:	n/a	n/a
8	POLR2A	chr6:31587530-31589245	H1-hESC	embryonic stem cell:	n/a	n/a
9	HEY1	chr6:31587323-31589155	HepG2	liver:	n/a	chr6:31588313-31588328 chr6:31588969-31588984
10	MXI1	chr6:31587603-31588435	K562	blood:	n/a	n/a
11	MXI1	chr6:31587887-31589027	H1-hESC	embryonic stem cell:	n/a	n/a
12	POLR2A	chr6:31587351-31591130	GM12878	blood:	n/a	n/a
13	EGR1	chr6:31587824-31588670	GM12878	blood:	n/a	chr6:31588178-31588185 chr6:31588204-31588217 chr6:31588204-31588217 chr6:31588204-31588217 chr6:31588201-31588215 chr6:31588203-31588218
14	TAF1	chr6:31587768-31589114	ECC-1	luminal epithelium:	n/a	n/a
15	ZMIZ1	chr6:31587374-31589030	K562	blood:	n/a	n/a
16	MAX	chr6:31587642-31589349	A549	lung:	n/a	chr6:31588445-31588455 chr6:31588013-31588023 chr6:31588204-31588214
17	CEBPD	chr6:31587381-31589638	K562	blood:	n/a	n/a
18	NRF1	chr6:31587675-31588463	GM12878	blood:	n/a	chr6:31588314-31588323
19	POLR2A	chr6:31587203-31590940	SK-N-MC	brain:	n/a	n/a
20	ARID3A	chr6:31587433-31588194	K562	blood:	n/a	n/a
21	TAF1	chr6:31587780-31588252	GM12892	blood:	n/a	n/a
22	MAX	chr6:31587679-31588396	HUVEC	blood vessel:	n/a	chr6:31588013-31588023 chr6:31588204-31588214
23	MAX	chr6:31587655-31589234	A549	lung:	n/a	chr6:31588445-31588455 chr6:31588013-31588023 chr6:31588204-31588214
24	CEBPD	chr6:31587716-31588723	HepG2	liver:	n/a	n/a
25	ELF1	chr6:31587673-31589050	GM12878	blood:	n/a	chr6:31588461-31588473
26	IRF1	chr6:31587537-31589622	K562	blood:	n/a	chr6:31589359-31589379 chr6:31588253-31588262 chr6:31589175-31589187 chr6:31589172-31589186 chr6:31588199-31588213 chr6:31588129-31588143 chr6:31587881-31587895 chr6:31587584-31587598 chr6:31588411-31588425 chr6:31589176-31589186 chr6:31587585-31587596
27	HDAC2	chr6:31587863-31589103	MCF-7	breast:	n/a	chr6:31588330-31588344 chr6:31588332-31588346 chr6:31588333-31588347 chr6:31588331-31588345 chr6:31588334-31588348
28	POLR2A	chr6:31587747-31589055	HepG2	liver:	n/a	n/a
29	E2F6	chr6:31587770-31588395	K562	blood:	n/a	chr6:31588199-31588210 chr6:31588253-31588262 chr6:31588200-31588212
30	BHLHE40	chr6:31587784-31589119	K562	blood:	n/a	n/a
31	EP300	chr6:31587396-31588269	GM12878	blood:	n/a	chr6:31587861-31587869 chr6:31588024-31588038
32	POLR2A	chr6:31587660-31589038	GM18505	blood:	n/a	n/a
33	YY1	chr6:31587881-31588253	H1-hESC	embryonic stem cell:	n/a	chr6:31588005-31588016
34	TBL1XR1	chr6:31587763-31588256	K562	blood:	n/a	n/a
35	POLR2A	chr6:31587740-31589029	HCT-116	colon:	n/a	n/a
36	SP1	chr6:31587740-31588545	K562	blood:	n/a	chr6:31587884-31587894 chr6:31588441-31588455 chr6:31588389-31588401 chr6:31588131-31588142 chr6:31587884-31587898 chr6:31588437-31588451 chr6:31587884-31587893 chr6:31588390-31588399 chr6:31587885-31587894 chr6:31587883-31587895 chr6:31587883-31587895 chr6:31588252-31588273 chr6:31588430-31588444 chr6:31588203-31588212 chr6:31587884-31587894 chr6:31587884-31587893
37	FOS	chr6:31587640-31588403	MCF10A-Er-Src	breast:	n/a	chr6:31588001-31588010
38	MYC	chr6:31587654-31588501	MCF10A-Er-Src	breast:	n/a	chr6:31588445-31588455 chr6:31588013-31588023 chr6:31588204-31588214
39	POLR2A	chr6:31587131-31589047	K562	blood:	n/a	n/a
40	POLR2A	chr6:31587703-31588915	MCF-7	breast:	n/a	n/a
41	SIN3A	chr6:31587920-31589229	H1-hESC	embryonic stem cell:	n/a	n/a
42	POLR2A	chr6:31587674-31589044	HepG2	liver:	n/a	n/a
43	MAFF	chr6:31587609-31588238	HepG2	liver:	n/a	n/a
44	MAX	chr6:31587640-31589019	SK-N-SH	brain:	n/a	chr6:31588445-31588455 chr6:31588013-31588023 chr6:31588204-31588214
45	YY1	chr6:31587761-31589207	K562	blood:	n/a	chr6:31588754-31588776 chr6:31588970-31588981 chr6:31588753-31588765 chr6:31588757-31588765 chr6:31588463-31588472 chr6:31588754-31588764 chr6:31588005-31588016 chr6:31588754-31588764
46	POLR2A	chr6:31587631-31589232	H1-neurons	neurons:	n/a	n/a
47	POLR2A	chr6:31587446-31589559	HUVEC	blood vessel:	n/a	n/a
48	ARID3A	chr6:31587478-31588691	HepG2	liver:	n/a	n/a
49	MAZ	chr6:31587472-31589602	IMR90	lung:	n/a	chr6:31588445-31588455 chr6:31588013-31588023 chr6:31588204-31588214
50	POLR2A	chr6:31587335-31589068	NB4	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31587909-31587959	LNCaP	prostate:	n/a
2	chr6:31587888-31587938	AoSMC	blood vessel:	n/a
3	chr6:31587888-31587938	GM12892	blood:	n/a
4	chr6:31587888-31587938	SK-N-MC	brain:	n/a
5	chr6:31587909-31587959	HAEpiC	amniotic membrane:	n/a
6	chr6:31587909-31587959	MCF-7	breast:	n/a
7	chr6:31587909-31587959	HPAEpiC	pulmonary alveolar:	n/a
8	chr6:31587909-31587959	ProgFib	skin:	n/a
9	chr6:31587888-31587938	HEEpiC	esophagus:	n/a
10	chr6:31587909-31587959	RPTEC	kidney:	n/a
11	chr6:31587888-31587938	K562	blood:	n/a
12	chr6:31587909-31587959	SAEC	small airway:	n/a
13	chr6:31587888-31587938	Jurkat	blood:	n/a
14	chr6:31587909-31587959	SK-N-SH_RA	brain:	n/a
15	chr6:31587888-31587938	U87	brain:	n/a
16	chr6:31587909-31587959	AG10803	skin:	n/a
17	chr6:31587888-31587938	IMR90	lung:	fetal
18	chr6:31587909-31587959	NH-A	brain:	n/a
19	chr6:31587888-31587938	ProgFib	skin:	n/a
20	chr6:31587888-31587938	HUVEC	blood vessel:	n/a
21	chr6:31587888-31587938	HEK293	kidney:	embryo
22	chr6:31587909-31587959	SKMC	muscle:	n/a
23	chr6:31587888-31587938	GM12891	blood:	n/a
24	chr6:31587888-31587938	ECC-1	luminal epithelium:	n/a
25	chr6:31587888-31587938	GM06990	blood:	n/a
26	chr6:31587909-31587959	GM12891	blood:	n/a
27	chr6:31587888-31587938	HIPEpiC	eye:	n/a
28	chr6:31587909-31587959	Hepatocyte	liver:	n/a
29	chr6:31587888-31587938	HepG2	liver:	n/a
30	chr6:31587909-31587959	NHBE	bronchial:	n/a
31	chr6:31587909-31587959	HMEC	breast:	n/a
32	chr6:31587888-31587938	HRCEpiC	kidney:	n/a
33	chr6:31587909-31587959	HRCEpiC	kidney:	n/a
34	chr6:31587909-31587959	HRPEpiC	eye:	n/a
35	chr6:31587888-31587938	H1-hESC	embryonic stem cell:	embryo
36	chr6:31587909-31587959	SK-N-MC	brain:	n/a
37	chr6:31587909-31587959	HNPCEpiC	eye:	n/a
38	chr6:31587909-31587959	PANC-1	pancreas:	n/a
39	chr6:31587909-31587959	U87	brain:	n/a
40	chr6:31587909-31587959	GM06990	blood:	n/a
41	chr6:31587909-31587959	HepG2	liver:	n/a
42	chr6:31587909-31587959	Jurkat	blood:	n/a
43	chr6:31587888-31587938	NH-A	brain:	n/a
44	chr6:31587888-31587938	AG10803	skin:	n/a
45	chr6:31587909-31587959	BE2_C	brain:	n/a
46	chr6:31587909-31587959	H1-hESC	embryonic stem cell:	embryo
47	chr6:31587888-31587938	BE2_C	brain:	n/a
48	chr6:31587888-31587938	Caco-2	colon:	n/a
49	chr6:31587909-31587959	PFSK-1	brain:	n/a
50	chr6:31587909-31587959	NB4	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:30707788..30708417-chr6:31587742..31588266,2	Hela-S3	cervix:
2	chr20:30181006..30181691-chr6:31587797..31588447,2	Hela-S3	cervix:
3	chr6:31586339..31592286-chr6:31830032..31833457,6	K562	blood:
4	chr6:31552844..31558545-chr6:31585940..31590373,6	MCF-7	breast:
5	chr17:39005957..39006832-chr6:31587624..31588353,2	Hela-S3	cervix:
6	chr17:62502972..62503519-chr6:31587590..31588218,2	Hela-S3	cervix:
7	chr6:31586197..31590294-chr6:31618213..31621899,10	MCF-7	breast:
8	chr6:31587857..31588639-chr6:31620295..31620869,2	Hela-S3	cervix:
9	chr6:31587256..31589320-chr6:32936886..32939451,2	K562	blood:
10	chr6:31513053..31519210-chr6:31585987..31595406,29	K562	blood:
11	chr6:31506740..31512488-chr6:31586502..31592966,30	K562	blood:
12	chr6:31495666..31498592-chr6:31587530..31589995,2	K562	blood:
13	chr6:31511829..31516829-chr6:31586761..31590434,8	MCF-7	breast:
14	chr6:31587448..31589830-chr6:31773246..31774977,2	MCF-7	breast:
15	chr17:38276983..38277924-chr6:31587852..31588427,2	Hela-S3	cervix:
16	chr19:36248961..36249492-chr6:31587707..31588358,2	Hela-S3	cervix:
17	chr2:149810063..149810583-chr6:31587476..31588137,2	Hela-S3	cervix:
18	chr2:110371072..110372232-chr6:31587268..31588184,3	Hela-S3	cervix:
19	chr6:31499501..31502092-chr6:31587750..31590043,2	K562	blood:
20	chr12:50794617..50795140-chr6:31587595..31588165,2	Hela-S3	cervix:
21	chr6:31514718..31515590-chr6:31587831..31588805,2	K562	blood:
22	chr6:31587709..31590301-chr6:31782411..31784104,4	MCF-7	breast:
23	chr6:31512646..31517552-chr6:31586243..31590655,20	K562	blood:
24	chr6:31553317..31555989-chr6:31586068..31588677,3	K562	blood:
25	chr17:8286034..8286836-chr6:31587583..31588490,2	Hela-S3	cervix:
26	chr1:52870010..52870644-chr6:31587859..31588787,2	Hela-S3	cervix:
27	chr6:31507058..31511692-chr6:31586700..31590601,11	MCF-7	breast:
28	chr6:31547327..31550393-chr6:31586001..31589795,6	K562	blood:
29	chr6:31587877..31588813-chr6:31619626..31620207,2	MCF-7	breast:
30	chr2:88315630..88316541-chr6:31587819..31588361,2	Hela-S3	cervix:
31	chr16:4849848..4850717-chr6:31587613..31588485,2	NB4	blood:
32	chr6:31507082..31511713-chr6:31583957..31591905,17	MCF-7	breast:
33	chr12:92538993..92539685-chr6:31587488..31588339,2	NB4	blood:
34	chr1:228327857..228328615-chr6:31587564..31588280,2	Hela-S3	cervix:
35	chr4:74124359..74125148-chr6:31587835..31588420,2	Hela-S3	cervix:
36	chr6:31545892..31550426-chr6:31586652..31590237,7	MCF-7	breast:
37	chr6:31501102..31502891-chr6:31587014..31589467,2	K562	blood:
38	chr6:26156349..26157011-chr6:31587842..31588365,2	Hela-S3	cervix:
39	chr6:31587809..31589938-chr6:32155791..32158478,2	K562	blood:
40	chr6:31586074..31595285-chr6:31626460..31635395,11	MCF-7	breast:
41	chr5:179334236..179335161-chr6:31587804..31588782,2	Hela-S3	cervix:
42	chr6:31587256..31589792-chr6:32936886..32939451,3	K562	blood:
43	chr6:31587332..31589434-chr6:31937953..31940828,2	K562	blood:
44	chr6:31587689..31590254-chr6:32938301..32941446,3	MCF-7	breast:
45	chr1:45196704..45197222-chr6:31587778..31588630,2	Hela-S3	cervix:
46	chr6:31542598..31545129-chr6:31587096..31589564,4	MCF-7	breast:
47	chr1:156698298..156698903-chr6:31587621..31588259,2	Hela-S3	cervix:
48	chr6:30683909..30686000-chr6:31586796..31589035,2	MCF-7	breast:
49	chr6:31506595..31512441-chr6:31585525..31590767,30	K562	blood:
50	chr6:31560247..31562390-chr6:31587195..31589122,2	K562	blood:

Variant related genes	Relation type
SNORA38	TF binding region
PRRC2A	TF binding region
SNORA38	CpG island
PRRC2A	CpG island
ENSG00000234006	Chromatin interaction
ENSG00000137337	Chromatin interaction
ENSG00000204439	Chromatin interaction
ENSG00000132466	Chromatin interaction
ENSG00000245904	Chromatin interaction
ENSG00000204511	Chromatin interaction
ENSG00000263756	Chromatin interaction
ENSG00000204389	Chromatin interaction
ENSG00000143303	Chromatin interaction
ENSG00000204428	Chromatin interaction
ENSG00000167595	Chromatin interaction
ENSG00000118454	Chromatin interaction
ENSG00000108654	Chromatin interaction
ENSG00000204463	Chromatin interaction
ENSG00000204385	Chromatin interaction
ENSG00000169895	Chromatin interaction
ENSG00000143774	Chromatin interaction
ENSG00000168298	Chromatin interaction
ENSG00000201680	Chromatin interaction
ENSG00000227507	Chromatin interaction
ENSG00000085840	Chromatin interaction
ENSG00000204344	Chromatin interaction
ENSG00000186522	Chromatin interaction
ENSG00000161813	Chromatin interaction
ENSG00000204475	Chromatin interaction
ENSG00000198142	Chromatin interaction
ENSG00000213719	Chromatin interaction
ENSG00000204386	Chromatin interaction
ENSG00000204390	Chromatin interaction
ENSG00000204498	Chromatin interaction
ENSG00000204256	Chromatin interaction
ENSG00000250220	Chromatin interaction
ENSG00000143319	Chromatin interaction
ENSG00000004776	Chromatin interaction
ENSG00000222724	Chromatin interaction
ENSG00000204348	Chromatin interaction
ENSG00000204394	Chromatin interaction
ENSG00000263809	Chromatin interaction
ENSG00000204438	Chromatin interaction
ENSG00000254870	Chromatin interaction
ENSG00000225499	Chromatin interaction
ENSG00000197568	Chromatin interaction
ENSG00000204304	Chromatin interaction
ENSG00000142627	Chromatin interaction
ENSG00000258890	Chromatin interaction
ENSG00000204392	Chromatin interaction
ENSG00000133639	Chromatin interaction
ENSG00000134748	Chromatin interaction
ENSG00000265236	Chromatin interaction
ENSG00000204482	Chromatin interaction
ENSG00000198563	Chromatin interaction
ENSG00000223837	Chromatin interaction
ENSG00000232810	Chromatin interaction
ENSG00000204516	Chromatin interaction
ENSG00000197226	Chromatin interaction
ENSG00000204444	Chromatin interaction
ENSG00000263020	Chromatin interaction
ENSG00000201207	Chromatin interaction
ENSG00000067836	Chromatin interaction
ENSG00000213760	Chromatin interaction
ENSG00000204435	Chromatin interaction
ENSG00000092853	Chromatin interaction
ENSG00000200169	Chromatin interaction
ENSG00000161970	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12524536	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12529661	0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16899941	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2077102	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2242653	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2242655	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2242657	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2242658	1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2269475	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2280800	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2295664	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2295665	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28366149	0.91[ASN][1000 genomes]
rs28474889	0.92[ASN][1000 genomes]
rs41267070	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4711274	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56826489	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59345959	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6927872	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs760294	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
2	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
3	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
4	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
5	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
6	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
7	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
8	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
9	nsv432868	chr6:31338844-31721033	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	250 gene(s)	inside rSNPs	diseases
10	nsv1021747	chr6:31386219-31907266	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	330 gene(s)	inside rSNPs	diseases
11	nsv830627	chr6:31496214-31659950	Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	182 gene(s)	inside rSNPs	diseases
12	nsv884418	chr6:31525448-31741078	Active TSS Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
13	nsv1033154	chr6:31550614-32009410	Strong transcription Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	326 gene(s)	inside rSNPs	diseases
14	nsv462871	chr6:31575276-31632134	Strong transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	133 gene(s)	inside rSNPs	diseases
15	nsv601942	chr6:31575276-31632134	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	133 gene(s)	inside rSNPs	diseases
16	nsv884419	chr6:31585000-31632651	Weak transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	138 gene(s)	inside rSNPs	diseases
17	nsv884420	chr6:31586827-31632651	Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	138 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs3763295	AIF1	cis	lymphoblastoid	seeQTL
rs3763295	CCHCR1	cis	lymphoblastoid	seeQTL
rs3763295	DOM3Z	Cis_1M	lymphoblastoid	RTeQTL
rs3763295	AIF1	Cis_1M	lymphoblastoid	RTeQTL
rs3763295	HLA-B	cis	lymphoblastoid	seeQTL
rs3763295	ENSG00000204472	cis	multi-tissue	Pritchard
rs3763295	PIPOX	trans	parietal	SCAN
rs3763295	BAT4	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31587200-31588600	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
2	chr6:31587200-31588800	Active TSS	Adipose Nuclei	Adipose
3	chr6:31587200-31589200	Active TSS	Brain Anterior Caudate	brain
4	chr6:31587200-31589200	Active TSS	Brain Cingulate Gyrus	brain
5	chr6:31587200-31589200	Active TSS	Colon Smooth Muscle	Colon
6	chr6:31587200-31589200	Active TSS	Skeletal Muscle Male	skeletal muscle
7	chr6:31587200-31589200	Active TSS	Thymus	Thymus
8	chr6:31587200-31589400	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:31587200-31589400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr6:31587200-31589400	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr6:31587200-31589400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:31587200-31589400	Active TSS	Breast Myoepithelial Primary Cells	Breast
13	chr6:31587200-31589400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr6:31587200-31589400	Active TSS	Brain Hippocampus Middle	brain
15	chr6:31587200-31589400	Active TSS	Brain Inferior Temporal Lobe	brain
16	chr6:31587200-31589400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
17	chr6:31587200-31589400	Active TSS	Duodenum Mucosa	Duodenum
18	chr6:31587200-31589400	Active TSS	Rectal Smooth Muscle	rectum
19	chr6:31587200-31589400	Active TSS	Stomach Smooth Muscle	stomach
20	chr6:31587200-31589400	Active TSS	Hela-S3	cervix
21	chr6:31587200-31589400	Active TSS	HMEC	breast
22	chr6:31587200-31589400	Active TSS	Osteobl	bone
23	chr6:31587200-31589600	Active TSS	HUES48 Cell Line	embryonic stem cell
24	chr6:31587200-31589600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr6:31587200-31589600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:31587200-31589600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:31587200-31589600	Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr6:31587200-31589600	Active TSS	GM12878-XiMat	blood
29	chr6:31587200-31589600	Active TSS	NH-A	brain
30	chr6:31587200-31589800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr6:31587200-31589800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr6:31587200-31589800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr6:31587200-31589800	Active TSS	Brain Germinal Matrix	brain
34	chr6:31587200-31589800	Active TSS	Psoas Muscle	Psoas
35	chr6:31587200-31590000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr6:31587200-31590000	Active TSS	HSMM	muscle
37	chr6:31587200-31590000	Active TSS	NHLF	lung
38	chr6:31587200-31590200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr6:31587400-31588200	Flanking Active TSS	Primary B cells from peripheral blood	blood
40	chr6:31587400-31588800	Active TSS	HUES6 Cell Line	embryonic stem cell
41	chr6:31587400-31588800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:31587400-31589000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
43	chr6:31587400-31589000	Active TSS	Liver	Liver
44	chr6:31587400-31589200	Active TSS	Brain Substantia Nigra	brain
45	chr6:31587400-31589400	Active TSS	ES-I3 Cell Line	embryonic stem cell
46	chr6:31587400-31589400	Active TSS	H1 Cell Line	embryonic stem cell
47	chr6:31587400-31589400	Active TSS	HUES64 Cell Line	embryonic stem cell
48	chr6:31587400-31589400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:31587400-31589400	Active TSS	Colonic Mucosa	Colon
50	chr6:31587400-31589400	Active TSS	Fetal Brain Female	brain

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