Variant report

Variant	rs3763660
Chromosome Location	chr9:136859913-136859914
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr9:136859780-136859930	A549	lung:	n/a	n/a
2	ZBTB7A	chr9:136859435-136859995	ECC-1	luminal epithelium:	n/a	n/a
3	RAD21	chr9:136859283-136860589	MCF-7	breast:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
4	RUNX3	chr9:136859471-136859925	GM12878	blood:	n/a	n/a
5	CHD1	chr9:136859440-136860013	IMR90	lung:	n/a	n/a
6	CTCF	chr9:136859335-136860779	A549	lung:	n/a	chr9:136860728-136860746 chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136860730-136860743 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
7	CTCF	chr9:136859475-136860457	K562	blood:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
8	RAD21	chr9:136859316-136859982	H1-hESC	embryonic stem cell:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
9	POLR2A	chr9:136859427-136859913	HepG2	liver:	n/a	n/a
10	RAD21	chr9:136859428-136859936	H1-hESC	embryonic stem cell:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
11	CTCF	chr9:136859880-136860030	GM12865	blood:	n/a	n/a
12	RAD21	chr9:136859316-136859990	MCF-7	breast:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
13	CTCF	chr9:136859482-136859933	HepG2	liver:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136859687-136859703 chr9:136859689-136859699
14	RAD21	chr9:136859356-136860439	Hela-S3	cervix:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
15	POLR2A	chr9:136859180-136859957	MCF10A-Er-Src	breast:	n/a	n/a
16	CTCF	chr9:136859004-136860729	MCF-7	breast:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859119-136859132 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
17	RAD21	chr9:136859259-136860561	IMR90	lung:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
18	CTCF	chr9:136859520-136860019	K562	blood:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136859687-136859703 chr9:136859689-136859699
19	WRNIP1	chr9:136859631-136859923	GM12878	blood:	n/a	n/a
20	RAD21	chr9:136859422-136859952	GM12878	blood:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
21	CTCF	chr9:136859378-136860535	MCF-7	breast:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
22	CTCF	chr9:136859395-136860694	HCT-116	colon:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
23	RAD21	chr9:136859489-136860445	A549	lung:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
24	TCF12	chr9:136859335-136860304	A549	lung:	n/a	chr9:136859684-136859694 chr9:136859714-136859724
25	RAD21	chr9:136859118-136860661	SK-N-SH	brain:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859118-136859131 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572 chr9:136859197-136859210
26	CTCF	chr9:136859470-136859914	H1-hESC	embryonic stem cell:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136859687-136859703 chr9:136859689-136859699
27	MAZ	chr9:136859234-136860156	IMR90	lung:	n/a	n/a
28	ZNF263	chr9:136859448-136859913	HEK293-T-REx	kidney:	n/a	n/a
29	RAD21	chr9:136859419-136859937	A549	lung:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
30	RAD21	chr9:136859244-136860530	HCT-116	colon:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
31	SMC3	chr9:136859235-136860335	GM12878	blood:	n/a	chr9:136859688-136859698 chr9:136859731-136859741 chr9:136860262-136860276 chr9:136859694-136859702 chr9:136859688-136859702
32	SMC3	chr9:136854840-136860653	SK-N-SH	brain:	n/a	chr9:136859688-136859698 chr9:136859731-136859741 chr9:136858943-136858953 chr9:136855901-136855911 chr9:136860262-136860276 chr9:136859694-136859702 chr9:136859688-136859702 chr9:136856794-136856804
33	CTCF	chr9:136859475-136859926	IMR90	lung:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136859687-136859703 chr9:136859689-136859699
34	RAD21	chr9:136859372-136859986	ECC-1	luminal epithelium:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
35	ZBTB7A	chr9:136859478-136859937	ECC-1	luminal epithelium:	n/a	n/a
36	CTCF	chr9:136859245-136860599	SK-N-SH	brain:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
37	SMC3	chr9:136859346-136860492	HepG2	liver:	n/a	chr9:136859688-136859698 chr9:136859731-136859741 chr9:136860262-136860276 chr9:136859694-136859702 chr9:136859688-136859702
38	FOXM1	chr9:136859364-136860136	GM12878	blood:	n/a	n/a
39	POLR2A	chr9:136859396-136860072	Hela-S3	cervix:	n/a	n/a
40	MAX	chr9:136859351-136860012	A549	lung:	n/a	n/a
41	CTCF	chr9:136859174-136860758	HCT-116	colon:	n/a	chr9:136860728-136860746 chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136860730-136860743 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
42	RAD21	chr9:136859329-136860489	HepG2	liver:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
43	RAD21	chr9:136859306-136860552	A549	lung:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
44	STAT5A	chr9:136859506-136859998	GM12878	blood:	n/a	n/a
45	CTCF	chr9:136859450-136860482	GM12878	blood:	n/a	chr9:136859681-136859702 chr9:136859686-136859704 chr9:136860260-136860278 chr9:136860299-136860317 chr9:136859688-136859701 chr9:136859559-136859568 chr9:136859692-136859701 chr9:136860263-136860272 chr9:136860265-136860275 chr9:136859687-136859703 chr9:136859689-136859699
46	RAD21	chr9:136859405-136859953	SK-N-SH_RA	brain:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
47	SMC3	chr9:136859237-136860451	Hela-S3	cervix:	n/a	chr9:136859688-136859698 chr9:136859731-136859741 chr9:136860262-136860276 chr9:136859694-136859702 chr9:136859688-136859702
48	ZNF143	chr9:136859477-136859926	H1-hESC	embryonic stem cell:	n/a	n/a
49	RAD21	chr9:136859381-136860453	HepG2	liver:	n/a	chr9:136859688-136859698 chr9:136859684-136859703 chr9:136859687-136859700 chr9:136859686-136859698 chr9:136859708-136859721 chr9:136859559-136859572
50	GABPA	chr9:136859355-136859977	H1-hESC	embryonic stem cell:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:136859325..136860777-chr9:136964002..136965283,7	MCF-7	breast:
2	chr9:136655644..136657543-chr9:136859054..136861724,2	K562	blood:
3	chr9:136607827..136608773-chr9:136859602..136860351,4	MCF-7	breast:
4	chr9:136607693..136608878-chr9:136859235..136860612,8	MCF-7	breast:
5	chr9:136657412..136658751-chr9:136858523..136860164,12	K562	blood:
6	chr9:136657819..136658763-chr9:136858806..136859951,5	MCF-7	breast:
7	chr9:136594711..136597550-chr9:136858767..136860355,2	MCF-7	breast:
8	chr9:136747429..136748291-chr9:136859497..136860075,2	MCF-7	breast:
9	chr9:136647007..136648956-chr9:136858795..136860235,12	MCF-7	breast:
10	chr9:136600335..136600989-chr9:136859268..136860138,2	MCF-7	breast:
11	chr9:136855194..136860597-chr9:136929703..136933650,7	MCF-7	breast:
12	chr9:136600362..136604558-chr9:136857405..136860234,5	MCF-7	breast:
13	chr9:136657511..136659120-chr9:136859180..136860603,16	MCF-7	breast:
14	chr9:136859431..136860674-chr9:136964030..136964900,5	MCF-7	breast:
15	chr9:136819042..136820561-chr9:136859120..136860817,2	MCF-7	breast:
16	chr9:136646919..136648935-chr9:136858713..136860466,10	MCF-7	breast:
17	chr9:136592345..136593069-chr9:136859637..136860159,2	MCF-7	breast:
18	chr9:136625089..136627399-chr9:136858004..136860328,2	MCF-7	breast:
19	chr9:136858694..136861040-chr9:136863202..136865256,2	MCF-7	breast:
20	chr9:136647409..136647939-chr9:136859642..136860182,3	K562	blood:
21	chr9:136858439..136860470-chr9:136963479..136965806,2	MCF-7	breast:
22	chr9:136591900..136594207-chr9:136858637..136860236,2	MCF-7	breast:
23	chr9:136662303..136663068-chr9:136859673..136860648,2	MCF-7	breast:
24	chr9:136856335..136860882-chr9:136888369..136892368,8	MCF-7	breast:
25	chr17:58677435..58680394-chr9:136857896..136860386,2	MCF-7	breast:
26	chr9:136592463..136593107-chr9:136859236..136860141,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WDR5-7	chr9:136857728-136861324	NONHSAT135347

Variant related genes	Relation type
VAV2	TF binding region
ENSG00000235106	Chromatin interaction
ENSG00000169925	Chromatin interaction
ENSG00000170836	Chromatin interaction
ENSG00000123453	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10116143	1.00[CEU][hapmap]
rs12001190	1.00[CEU][hapmap]
rs12115818	1.00[CEU][hapmap]
rs12338811	1.00[CEU][hapmap]
rs12341506	1.00[CEU][hapmap]
rs3780783	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894124	chr9:136716399-136870787	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv894125	chr9:136723520-136931957	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv894128	chr9:136753246-136906752	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1046310	chr9:136762829-136872226	Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv894130	chr9:136767346-136906752	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	nsv831748	chr9:136788484-136944326	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
7	nsv894131	chr9:136792765-136906752	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
8	nsv831749	chr9:136809200-136915764	Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
9	nsv894132	chr9:136813341-136950691	Active TSS Genic enhancers Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
10	nsv428226	chr9:136825035-136994606	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
11	nsv615743	chr9:136835343-136874158	Enhancers Bivalent Enhancer Active TSS Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
12	nsv894133	chr9:136839840-136887757	Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv894134	chr9:136839840-136892523	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv894135	chr9:136839840-136927657	Strong transcription Enhancers Genic enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
15	nsv894136	chr9:136839840-136938961	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv894137	chr9:136839840-136950691	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
17	nsv894138	chr9:136839840-137093168	Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
18	nsv615744	chr9:136843974-136865879	Enhancers Active TSS Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
19	nsv615745	chr9:136844973-136876021	Enhancers Active TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
20	nsv825148	chr9:136848471-137025632	Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
21	nsv615746	chr9:136848821-136881323	Enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
22	esv1799134	chr9:136850906-136863033	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
23	esv1823529	chr9:136850906-136863033	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
24	esv1834445	chr9:136850906-136863033	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
25	nsv615747	chr9:136852501-136877628	Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
26	nsv615756	chr9:136856591-136859913	Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
27	esv1840870	chr9:136856591-136865879	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
28	esv1841228	chr9:136856591-136865879	Bivalent/Poised TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	esv1839642	chr9:136856591-136877902	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
30	esv1842103	chr9:136856591-136878235	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
31	esv1797477	chr9:136856591-136879116	Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
32	esv1838443	chr9:136856630-136862410	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
33	nsv615763	chr9:136856694-136859913	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
34	nsv615769	chr9:136856808-136859913	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
35	esv1839298	chr9:136856808-136865879	Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:136858400-136860400	Enhancers	Fetal Brain Male	brain
2	chr9:136858600-136860000	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr9:136858600-136860200	Enhancers	Primary B cells from cord blood	blood
4	chr9:136858800-136860000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr9:136858800-136860000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr9:136858800-136860000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr9:136858800-136860000	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
8	chr9:136858800-136860000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
9	chr9:136858800-136860000	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr9:136858800-136860000	Enhancers	Stomach Mucosa	stomach
11	chr9:136858800-136860400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:136858800-136860400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:136858800-136860600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr9:136858800-136861000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr9:136858800-136861600	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:136859000-136860000	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:136859000-136860000	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr9:136859000-136860000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr9:136859000-136860000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr9:136859000-136860000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr9:136859000-136860000	Enhancers	Fetal Heart	heart
22	chr9:136859000-136860000	Enhancers	Right Ventricle	heart
23	chr9:136859000-136860200	Enhancers	Primary B cells from peripheral blood	blood
24	chr9:136859000-136860200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr9:136859000-136860200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr9:136859000-136860400	Enhancers	Fetal Stomach	stomach
27	chr9:136859000-136860600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:136859000-136860600	Enhancers	HMEC	breast
29	chr9:136859000-136860600	Enhancers	NH-A	brain
30	chr9:136859000-136860800	Enhancers	HSMMtube	muscle
31	chr9:136859000-136861600	Weak transcription	Aorta	Aorta
32	chr9:136859200-136860000	Enhancers	ES-I3 Cell Line	embryonic stem cell
33	chr9:136859200-136860000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
34	chr9:136859200-136860000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:136859200-136860000	Enhancers	Brain Germinal Matrix	brain
36	chr9:136859200-136860000	Enhancers	Colon Smooth Muscle	Colon
37	chr9:136859200-136860000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
38	chr9:136859200-136860000	Enhancers	GM12878-XiMat	blood
39	chr9:136859200-136860400	Enhancers	Fetal Intestine Small	intestine
40	chr9:136859200-136860400	Enhancers	A549	lung
41	chr9:136859200-136860600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr9:136859200-136860600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr9:136859200-136860600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:136859200-136860600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr9:136859200-136860600	Enhancers	Muscle Satellite Cultured Cells	--
46	chr9:136859200-136860600	Enhancers	Duodenum Mucosa	Duodenum
47	chr9:136859200-136860600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
48	chr9:136859200-136860600	Enhancers	HSMM	muscle
49	chr9:136859200-136860600	Enhancers	Osteobl	bone
50	chr9:136859200-136860800	Enhancers	Fetal Muscle Leg	muscle

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