Variant report

Variant	rs3763676
Chromosome Location	chr10:5136499-5136500
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SRF	chr10:5136402-5136638	HepG2	liver:	n/a	chr10:5136481-5136492
2	ZBTB33	chr10:5136439-5137196	A549	lung:	n/a	n/a
3	CEBPB	chr10:5136490-5136655	H1-hESC	embryonic stem cell:	n/a	n/a
4	EP300	chr10:5136388-5136725	HepG2	liver:	n/a	n/a
5	SP1	chr10:5136292-5138992	A549	lung:	n/a	chr10:5136552-5136562 chr10:5136548-5136562 chr10:5136551-5136563 chr10:5136551-5136563 chr10:5136552-5136561 chr10:5136507-5136528
6	FOS	chr10:5136478-5137018	MCF10A-Er-Src	breast:	n/a	chr10:5136821-5136831 chr10:5136820-5136831 chr10:5136823-5136834 chr10:5136821-5136830 chr10:5136821-5136831 chr10:5136822-5136831 chr10:5136820-5136832 chr10:5136822-5136829
7	BCL3	chr10:5136379-5137271	A549	lung:	n/a	chr10:5136770-5136779
8	FOS	chr10:5136486-5137194	MCF10A-Er-Src	breast:	n/a	chr10:5136821-5136831 chr10:5136820-5136831 chr10:5136823-5136834 chr10:5136821-5136830 chr10:5136821-5136831 chr10:5136822-5136831 chr10:5136820-5136832 chr10:5136822-5136829
9	POLR2A	chr10:5136360-5136935	U87	brain:	n/a	n/a
10	ARID3A	chr10:5136259-5137212	HepG2	liver:	n/a	n/a
11	SMC3	chr10:5136448-5137232	HepG2	liver:	n/a	chr10:5137011-5137025
12	TAF1	chr10:5136416-5136784	Hela-S3	cervix:	n/a	n/a
13	NFYB	chr10:5136275-5136945	Hela-S3	cervix:	n/a	chr10:5136517-5136527
14	CBX3	chr10:5136392-5137166	K562	blood:	n/a	n/a
15	SMC3	chr10:5136436-5137393	SK-N-SH	brain:	n/a	chr10:5137011-5137025
16	EP300	chr10:5134927-5137485	A549	lung:	n/a	chr10:5135763-5135777 chr10:5136729-5136738 chr10:5136822-5136831
17	MBD4	chr10:5136419-5137259	HepG2	liver:	n/a	n/a
18	TBP	chr10:5136481-5136945	K562	blood:	n/a	n/a
19	SMC3	chr10:5136484-5137557	Hela-S3	cervix:	n/a	chr10:5137011-5137025
20	SIN3AK20	chr10:5136368-5137274	A549	lung:	n/a	n/a
21	POLR2A	chr10:5136463-5137344	HepG2	liver:	n/a	n/a
22	TAF1	chr10:5136477-5136723	H1-hESC	embryonic stem cell:	n/a	n/a
23	ELF1	chr10:5136402-5137113	A549	lung:	n/a	n/a
24	RAD21	chr10:5136411-5137321	HepG2	liver:	n/a	n/a
25	FOXA2	chr10:5136414-5136702	HepG2	liver:	n/a	n/a
26	POLR2A	chr10:5136437-5136844	A549	lung:	n/a	n/a
27	POLR2A	chr10:5136484-5137344	A549	lung:	n/a	n/a
28	GATA1	chr10:5136396-5137394	PBDE	blood:	n/a	chr10:5136435-5136456
29	EGR1	chr10:5136374-5136628	K562	blood:	n/a	n/a
30	FOS	chr10:5136452-5137010	HUVEC	blood vessel:	n/a	chr10:5136821-5136831 chr10:5136820-5136831 chr10:5136823-5136834 chr10:5136821-5136830 chr10:5136821-5136831 chr10:5136822-5136831 chr10:5136820-5136832 chr10:5136822-5136829
31	POLR2A	chr10:5136413-5136734	A549	lung:	n/a	n/a
32	NFYB	chr10:5136394-5136695	K562	blood:	n/a	chr10:5136517-5136527
33	RCOR1	chr10:5136485-5136723	HepG2	liver:	n/a	n/a
34	POLR2A	chr10:5136420-5136837	K562	blood:	n/a	n/a
35	STAT3	chr10:5136419-5137153	MCF10A-Er-Src	breast:	n/a	chr10:5136821-5136830 chr10:5136770-5136781
36	MAX	chr10:5136266-5137368	A549	lung:	n/a	n/a
37	POLR2A	chr10:5136463-5137103	Hela-S3	cervix:	n/a	n/a
38	MAZ	chr10:5136480-5136680	HepG2	liver:	n/a	n/a
39	YY1	chr10:5136455-5136694	A549	lung:	n/a	n/a
40	RAD21	chr10:5136430-5136705	HepG2	liver:	n/a	n/a
41	RAD21	chr10:5136467-5137313	HepG2	liver:	n/a	n/a
42	POLR2A	chr10:5136466-5137049	HepG2	liver:	n/a	n/a
43	NFIC	chr10:5136359-5137065	HepG2	liver:	n/a	n/a
44	HEY1	chr10:5136423-5137122	HepG2	liver:	n/a	n/a
45	MXI1	chr10:5136473-5136709	HepG2	liver:	n/a	n/a
46	CEBPB	chr10:5136414-5136770	A549	lung:	n/a	n/a
47	REST	chr10:5135146-5139228	A549	lung:	n/a	n/a
48	POLR2A	chr10:5136403-5137571	PBDE	blood:	n/a	n/a
49	MYBL2	chr10:5136356-5137283	HepG2	liver:	n/a	n/a
50	JUND	chr10:5136411-5137104	A549	lung:	n/a	chr10:5136821-5136831 chr10:5136823-5136834 chr10:5136821-5136830 chr10:5136821-5136831 chr10:5136820-5136831 chr10:5136822-5136831 chr10:5136820-5136832 chr10:5136822-5136829

No.	Distal block	Cell Line	Cell type
1	chr10:5135730..5137727-chr10:5144800..5147673,2	K562	blood:
2	chr10:5119351..5122041-chr10:5135538..5138283,2	MCF-7	breast:
3	chr10:4867516..4869900-chr10:5135201..5137283,2	K562	blood:
4	chr10:5135730..5138906-chr10:5144094..5147673,3	K562	blood:

Variant related genes	Relation type
ENSG00000239142	TF binding region
AKR1C3	TF binding region
ENSG00000196139	Chromatin interaction
ENSG00000165568	Chromatin interaction

Extended variants
information (count: 105 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs10508294	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10904415	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10904416	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10904436	0.80[EUR][1000 genomes]
rs10904439	0.81[EUR][1000 genomes]
rs11252928	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11252931	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252934	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252935	1.00[CEU][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11252936	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252937	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252941	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11252955	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11252968	0.96[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252972	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252978	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11252992	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11253010	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11253012	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11253013	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11253015	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11253016	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11253018	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11253019	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11253020	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11253021	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11253022	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11253036	0.80[EUR][1000 genomes]
rs11253039	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11492955	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11517338	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11517343	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11517344	0.83[AMR][1000 genomes]
rs12354416	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12354530	1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[MEX][hapmap];0.97[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12357445	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12357449	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12359896	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12360480	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12769156	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1334466	0.86[AMR][1000 genomes]
rs1334467	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1334471	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1334738	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1334739	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17134288	0.96[CEU][hapmap];0.84[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17305952	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1889458	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1937843	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1937909	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2020172	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2210679	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2398200	0.83[GIH][hapmap]
rs2895061	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2895064	0.85[CEU][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35219485	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4448597	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4880711	0.92[CEU][hapmap];0.95[GIH][hapmap];0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs4880714	0.82[EUR][1000 genomes]
rs4880715	0.82[EUR][1000 genomes]
rs4881406	0.96[CEU][hapmap];0.87[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4881407	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6601901	0.87[EUR][1000 genomes]
rs6601907	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6601918	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7069331	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7090349	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7090531	0.96[CEU][hapmap];0.95[GIH][hapmap];0.80[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7097295	0.96[CEU][hapmap];0.95[GIH][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7097646	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7477623	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7478099	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7741	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.97[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7920141	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7920454	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9730736	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9794203	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:28 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894792	chr10:4832920-5498724	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv948794	chr10:4863093-5227382	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv1045155	chr10:4872239-5211318	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv1040343	chr10:4872814-5196815	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
5	nsv540462	chr10:4872814-5196815	Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	nsv869470	chr10:4878904-5203685	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
7	nsv466713	chr10:4901798-5319679	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
8	nsv549881	chr10:4901798-5319679	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
9	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
10	nsv1050246	chr10:4927428-5211318	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
11	nsv549882	chr10:4943518-5203864	Weak transcription Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
12	esv2763913	chr10:4961021-5321407	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
13	nsv1039386	chr10:5008383-5348491	Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	nsv1036566	chr10:5037926-5261426	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
15	nsv549883	chr10:5037926-5275762	Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
16	nsv1047484	chr10:5076258-5261482	Enhancers Strong transcription Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
17	nsv1036291	chr10:5076258-5456234	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
18	nsv1042487	chr10:5090313-5196900	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
19	nsv540463	chr10:5090313-5196900	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
20	nsv540464	chr10:5108345-5196815	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	nsv540465	chr10:5108345-5261482	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
22	nsv540466	chr10:5114577-5196815	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
23	nsv540467	chr10:5114577-5225365	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
24	nsv540468	chr10:5114577-5261482	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
25	nsv540469	chr10:5120774-5225365	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
26	nsv540470	chr10:5120774-5261482	Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
27	nsv540471	chr10:5133561-5261482	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
28	nsv540472	chr10:5133561-5284334	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs3763676	AKR1C3	cis	cerebellum	SCAN
rs3763676	AKR1C3	cis	parietal	SCAN

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5135400-5136600	Weak transcription	Stomach Mucosa	stomach
2	chr10:5135400-5138000	Active TSS	A549	lung
3	chr10:5135800-5138400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr10:5136000-5139400	Active TSS	Duodenum Mucosa	Duodenum
5	chr10:5136200-5136600	Enhancers	Fetal Intestine Large	intestine
6	chr10:5136200-5136600	Enhancers	Fetal Intestine Small	intestine
7	chr10:5136200-5136600	Active TSS	HepG2	liver
8	chr10:5136200-5137600	Active TSS	HMEC	breast
9	chr10:5136200-5138000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr10:5136200-5138400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr10:5136200-5138800	Active TSS	Rectal Mucosa Donor 29	rectum
12	chr10:5136400-5136600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr10:5136400-5136600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr10:5136400-5136600	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:5136400-5136600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr10:5136400-5136600	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr10:5136400-5136600	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:5136400-5136600	Active TSS	Primary T helper cells PMA-I stimulated	--
19	chr10:5136400-5136600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr10:5136400-5136600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:5136400-5136600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
22	chr10:5136400-5136600	Active TSS	Fetal Kidney	kidney
23	chr10:5136400-5136600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr10:5136400-5136600	Active TSS	HSMM	muscle
25	chr10:5136400-5136600	Enhancers	K562	blood
26	chr10:5136400-5136600	Active TSS	NHDF-Ad	bronchial
27	chr10:5136400-5136600	Active TSS	Osteobl	bone
28	chr10:5136400-5136800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
29	chr10:5136400-5136800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr10:5136400-5136800	Flanking Active TSS	Adipose Nuclei	Adipose
31	chr10:5136400-5137000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
32	chr10:5136400-5137000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
33	chr10:5136400-5137000	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr10:5136400-5137000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr10:5136400-5137200	Active TSS	Primary T cells from cord blood	blood
36	chr10:5136400-5137200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
37	chr10:5136400-5137200	Active TSS	Esophagus	oesophagus
38	chr10:5136400-5137200	Flanking Active TSS	NHEK	skin
39	chr10:5136400-5137400	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr10:5136400-5137400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
41	chr10:5136400-5137400	Active TSS	Ovary	ovary
42	chr10:5136400-5137400	Active TSS	Pancreas	Pancrea
43	chr10:5136400-5137400	Flanking Active TSS	HUVEC	blood vessel
44	chr10:5136400-5137400	Active TSS	NHLF	lung
45	chr10:5136400-5137600	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr10:5136400-5137600	Active TSS	Primary T cells fromperipheralblood	blood
47	chr10:5136400-5137600	Active TSS	Pancreatic Islets	Pancreatic Islet
48	chr10:5136400-5137600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
49	chr10:5136400-5137800	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr10:5136400-5137800	Active TSS	Skeletal Muscle Male	skeletal muscle

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