Variant report

Variant	rs3764864
Chromosome Location	chr3:45936237-45936238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:45928724..45930897-chr3:45935316..45937511,2	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12054287	0.83[CHB][hapmap]
rs17078387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17078398	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2191031	1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.84[ASN][1000 genomes]
rs2236938	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3774641	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[ASN][1000 genomes]
rs58819318	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59104991	0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62245079	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62245094	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62245096	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62245101	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9869542	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv876736	chr3:45900621-46027410	Strong transcription Enhancers Transcr. at gene 5' and 3' Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45923400-45948200	Weak transcription	Right Atrium	heart
2	chr3:45925200-45949600	Weak transcription	Pancreas	Pancrea
3	chr3:45925600-45947800	Genic enhancers	Dnd41	blood
4	chr3:45927800-45936400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr3:45928800-45936600	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
6	chr3:45929800-45936600	Enhancers	Primary B cells from cord blood	blood
7	chr3:45929800-45936600	Enhancers	Primary B cells from peripheral blood	blood
8	chr3:45932400-45936600	Weak transcription	Fetal Stomach	stomach
9	chr3:45932400-45960200	Weak transcription	Fetal Intestine Small	intestine
10	chr3:45933600-45937800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr3:45934000-45936400	Weak transcription	HMEC	breast
12	chr3:45934000-45936800	Enhancers	Primary hematopoietic stem cells	blood
13	chr3:45934000-45960200	Weak transcription	Right Ventricle	heart
14	chr3:45934200-45936600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr3:45934200-45938400	Weak transcription	Aorta	Aorta
16	chr3:45934600-45936800	Enhancers	Primary T cells from cord blood	blood
17	chr3:45934600-45946200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr3:45935000-45936600	Transcr. at gene 5' and 3'	Thymus	Thymus
19	chr3:45935400-45936600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr3:45935400-45941200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr3:45935400-45945000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:45936000-45936600	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chr3:45936000-45936800	Enhancers	Duodenum Mucosa	Duodenum
24	chr3:45936000-45937600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr3:45936000-45937600	Weak transcription	Placenta	Placenta
26	chr3:45936000-45947600	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr3:45936200-45936600	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:45936200-45936800	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr3:45936200-45939400	Enhancers	Hela-S3	cervix

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